{ "_id": "6a49bdeefcd1f935c701c7b8", "Package": "Rmmquant", "Type": "Package", "Title": "RNA-Seq multi-mapping Reads Quantification Tool", "Version": "1.31.0", "Date": "2023-04-05", "Authors@R": "person(\"Zytnicki\", \"Matthias\", email = \"matthias.zytnicki@inra.fr\",\nrole = c(\"aut\", \"cre\"))", "Description": "RNA-Seq is currently used routinely, and it provides\naccurate information on gene transcription. However, the method\ncannot accurately estimate duplicated genes expression. Several\nstrategies have been previously used, but all of them provide\nbiased results. With Rmmquant, if a read maps at different\npositions, the tool detects that the corresponding genes are\nduplicated; it merges the genes and creates a merged gene. The\ncounts of ambiguous reads is then based on the input genes and\nthe merged genes. Rmmquant is a drop-in replacement of the\nwidely used tools findOverlaps and featureCounts that handles\nmulti-mapping reads in an unabiased way.", "License": "GPL-3", "Encoding": "UTF-8", "SystemRequirements": "C++11", "RoxygenNote": "7.0.2", "biocViews": "GeneExpression, Transcription", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git make libharfbuzz-dev libbz2-dev libgit2-dev\nlibicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev\nlibuv1-dev libwebp-dev libxml2-dev libssl-dev libx11-dev\nxz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:48:09 UTC", "RemoteUrl": "https://github.com/bioc/Rmmquant", "RemoteRef": "HEAD", "RemoteSha": "e4a76d6ccef094f60278e50cd7a6433d697f2a26", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-18 11:24:15 UTC", "User": "root" }, "Author": "Zytnicki Matthias [aut, cre]", "Maintainer": "Zytnicki Matthias ", "_user": "bioc", 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