{
  "_id": "6a66f8f9a43a83b8c047f815",
  "Package": "Rhtslib",
  "Title": "HTSlib high-throughput sequencing library as an R package",
  "Description": "This package provides version 1.18 of the 'HTSlib' C\nlibrary for high-throughput sequence analysis. The package is\nprimarily useful to developers of other R packages who wish to\nmake use of HTSlib. Motivation and instructions for use of this\npackage are in the vignette, vignette(package=\"Rhtslib\",\n\"Rhtslib\").",
  "biocViews": "DataImport, Sequencing",
  "URL": "https://bioconductor.org/packages/Rhtslib, http://www.htslib.org/",
  "BugReports": "https://github.com/Bioconductor/Rhtslib/issues",
  "Version": "3.9.0",
  "License": "LGPL (>= 2)",
  "Copyright": "Unless otherwise noted in the file, all files outside\nsrc/htslib-1.18 or inst/include copyright Bioconductor; for\nfiles inside src/htslib-1.18 or inst/include, see file\nsrc/htslib-1.18/LICENSE.",
  "Encoding": "UTF-8",
  "Authors@R": "c(\nperson(\"Nathaniel\", \"Hayden\", role=c(\"led\", \"aut\"),\nemail=\"nhayden@fredhutch.org\"),\nperson(\"Martin\", \"Morgan\", role=\"aut\",\nemail=\"martin.morgan@roswellpark.org\"),\nperson(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"),\nemail=\"hpages.on.github@gmail.com\"),\nperson(\"Tomas\", \"Kalibera\", role=\"ctb\"),\nperson(\"Jeroen\", \"Ooms\", role=\"ctb\"))",
  "SystemRequirements": "libbz2 & liblzma & libcurl (with header files), GNU\nmake",
  "StagedInstall": "no",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "make libbz2-dev liblzma-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:40 UTC",
  "RemoteUrl": "https://github.com/bioc/Rhtslib",
  "RemoteRef": "HEAD",
  "RemoteSha": "29c0999d599e15f97b80bf26ea8d87e006e92913",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-27 05:43:11 UTC",
    "User": "root"
  },
  "Author": "Nathaniel Hayden [led, aut],\nMartin Morgan [aut],\nHervé Pagès [aut, cre],\nTomas Kalibera [ctb],\nJeroen Ooms [ctb]",
  "Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "Rhtslib_3.9.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/f02c607bb8f34e8b1b2b0ac8550c89d73ef6b6a56eafdb01f44e9e9ea537e18f",
  "_filesize": 5059315,
  "_sha256": "f02c607bb8f34e8b1b2b0ac8550c89d73ef6b6a56eafdb01f44e9e9ea537e18f",
  "_expires": "2026-11-04T06:21:42.000Z",
  "_created": "2026-07-27T05:43:11.000Z",
  "_published": "2026-07-27T06:21:44.998Z",
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 7
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709",
  "_status": "success",
  "_upstream": "https://github.com/bioc/Rhtslib",
  "_commit": {
    "id": "29c0999d599e15f97b80bf26ea8d87e006e92913",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380040
  },
  "_maintainer": {
    "name": "Hervé Pagès",
    "email": "hpages.on.github@gmail.com",
    "login": "hpages",
    "linkedin": "in/hervé-pagès-5038527",
    "description": "",
    "uuid": 8810451
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 89896841160,
      "time": 225,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643229253"
    },
    {
      "job": 89896841130,
      "time": 236,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8643169656"
    },
    {
      "job": 89896841126,
      "time": 198,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8643220548"
    },
    {
      "job": 89896841143,
      "time": 161,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643148059"
    },
    {
      "job": 89896841139,
      "time": 227,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643228875"
    },
    {
      "job": 89896841175,
      "time": 119,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8643743790"
    },
    {
      "job": 89896841136,
      "time": 384,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8643409706"
    },
    {
      "job": 89896841144,
      "time": 122,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643744223"
    },
    {
      "job": 89896841172,
      "time": 258,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643375793"
    },
    {
      "job": 89896082991,
      "time": 316,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8643102021"
    },
    {
      "job": 89896841107,
      "time": 175,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8643214120"
    },
    {
      "job": 89896841155,
      "time": 169,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8643213865"
    },
    {
      "job": 89896841141,
      "time": 177,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8643215616"
    },
    {
      "job": 89896841111,
      "time": 214,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8643226090"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 625,
  "_updates": [
    {
      "week": "2025-43",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 3
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "3.9.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "3.8.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dataimport",
    "sequencing",
    "bioconductor-package",
    "core-package",
    "curl",
    "bzip2",
    "xz-utils",
    "zlib"
  ],
  "_stars": 11,
  "_contributors": [
    {
      "user": "hpages",
      "count": 100,
      "uuid": 8810451
    },
    {
      "user": "nhayden",
      "count": 37,
      "uuid": 6475155
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 15,
      "uuid": 2746443
    },
    {
      "user": "dtenenba",
      "count": 13,
      "uuid": 2286826
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "jeroen",
      "count": 1,
      "uuid": 216319
    },
    {
      "user": "mtmorgan",
      "count": 1,
      "uuid": 118552
    },
    {
      "user": "lshep",
      "count": 1,
      "uuid": 18724380
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 451,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/bioconductor/rhtslib",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/Rhtslib.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/rhtslib",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "pkgconfig"
  ],
  "_help": [
    {
      "page": "Rhtslib-package",
      "title": "An R packaged HTSlib 1.18",
      "topics": [
        "Rhtslib-package",
        "htsVersion",
        "Rhtslib"
      ]
    },
    {
      "page": "pkgconfig",
      "title": "Compiler configuration arguments for use of Rhtslib",
      "topics": [
        "pkgconfig"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/Rhtslib/raw/HEAD/README.md",
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libcurl",
      "package": "libcurl4t64",
      "headers": "libcurl4-openssl-dev",
      "source": "curl",
      "version": "8.18.0-1ubuntu2.3",
      "name": "curl",
      "homepage": "https://curl.se/",
      "description": "easy-to-use client-side URL transfer library (OpenSSL flavour)"
    },
    {
      "shlib": "libbz2",
      "package": "libbz2-1.0",
      "headers": "libbz2-dev",
      "source": "bzip2",
      "version": "1.0.8-6build2",
      "name": "bzip2",
      "homepage": "https://sourceware.org/bzip2/",
      "description": "high-quality block-sorting file compressor library - runtime"
    },
    {
      "shlib": "liblzma",
      "package": "liblzma5",
      "headers": "liblzma-dev",
      "source": "xz-utils",
      "version": "5.8.3-1",
      "name": "xz-utils",
      "homepage": "https://tukaani.org/xz/",
      "description": "XZ-format compression library"
    },
    {
      "shlib": "libz",
      "package": "zlib1g",
      "headers": "zlib1g-dev",
      "source": "zlib",
      "version": "1:1.3.dfsg+really1.3.1-1ubuntu3",
      "name": "zlib",
      "homepage": "http://zlib.net/",
      "description": "compression library - runtime"
    }
  ],
  "_vignettes": [
    {
      "source": "Rhtslib.Rmd",
      "filename": "Rhtslib.html",
      "title": "Motivation and use of Rhtslib",
      "author": "Nathaniel Hayden, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Motivation",
        "HTSlib version",
        "Use",
        "Find headers",
        "Compile and link against the library",
        "Implementation notes"
      ],
      "created": "2015-03-04 00:49:46",
      "modified": "2024-11-27 01:24:54",
      "commits": 21
    }
  ],
  "_score": 9.393575203269588,
  "_indexed": true,
  "_nocasepkg": "rhtslib",
  "_universes": [
    "bioc",
    "hpages",
    "bioconductor"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "3.9.0",
      "date": "2026-07-27T05:47:33.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/298770769c67bfbccfd357c1e1d5119cbc8e0157eb0ad10bb0ce42669106b1f5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "3.9.0",
      "date": "2026-07-27T05:50:25.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/1f85c0e79e44e974d5a8f0fdcad41d07272732ff0b34814e8a00c82930da200c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "3.9.0",
      "date": "2026-07-27T05:46:21.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/f368983d03a2257d84fc09f56b6d25ee8b957b9c6666c49f48842befcef15072",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "3.9.0",
      "date": "2026-07-27T05:50:56.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/8a3f766e5a74d3d0492f4e187301cf72a0ef03eae3405607352e64b4761bab6a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "3.9.0",
      "date": "2026-07-27T06:20:47.000Z",
      "arch": "aarch64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/1c99b418430d0212032656e19a6c8ace39e36945f40ff2b223c5f22ad6641a97",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "3.9.0",
      "date": "2026-07-27T06:00:55.000Z",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/e3fdebe9e438c9624cf1c3c460d02fff2d2023ac345c66797f7925d21da11ddc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "3.9.0",
      "date": "2026-07-27T06:20:41.000Z",
      "arch": "aarch64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/80b15544bc329f156d3130c147f578bd27c9ebc96687b005970735d22974ffe2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "3.9.0",
      "date": "2026-07-27T05:59:33.000Z",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/70641ac50d0b6bec1af08f573765dbea140e701ae224105639d158891fa26a9b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "3.9.0",
      "date": "2026-07-27T05:50:33.000Z",
      "arch": "emscripten",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/96380f910b8b600a88bed8e81e7d62b37cb759c2152ca0f4c1a92f264b9c461c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "3.9.0",
      "date": "2026-07-27T05:49:09.000Z",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/6b05e2ea0de25af73d0646bd08d1962e648c43e80ebd2d1e58879ef7308cd23b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "3.9.0",
      "date": "2026-07-27T05:49:15.000Z",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/de8c666b078476fbb84070cc03e5a45d62b4da40893e4608353e8535abb7efa1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "3.9.0",
      "date": "2026-07-27T05:49:26.000Z",
      "arch": "x86_64",
      "commit": "29c0999d599e15f97b80bf26ea8d87e006e92913",
      "fileid": "https://r2.ropensci.org/f236d6777a27c6839408107b8614c72a18534a5c0851a4fa5e3c9139e926eccf",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30240341709"
    }
  ]
}