{
  "_id": "6a3aaee144e65c5976a86286",
  "Package": "Rdisop",
  "Title": "Decomposition of Isotopic Patterns",
  "Version": "1.73.0",
  "Date": "2026-02-23",
  "Authors@R": "c(\nperson(\"Anton\", \"Pervukhin\", , \"apervukh@minet.uni-jena.de\", role = c(\"aut\")),\nperson(\"Steffen\", \"Neumann\", , \"sneumann@ipb-halle.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7899-7192\")),\nperson(\"Jan\", \"Lisec\", , \"jan.lisec@bam.de\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-1220-2286\")),\nperson(\"Miao\", \"Yu\", , \"yufreecas@gmail.com\", role = c(\"ctb\")),\nperson(\"Roberto\", \"Canteri\", , , role = c(\"ctb\"))\n)",
  "Description": "In high resolution mass spectrometry (HR-MS), the measured\nmasses can be decomposed into potential element combinations\n(chemical sum formulas). Where additional mass/intensity\ninformation of respective isotopic peaks is available,\ndecomposition can take this information into account to better\nrank the potential candidate sum formulas. To compare measured\nmass/intensity information with the theoretical distribution of\ncandidate sum formulas, the latter needs to be calculated. This\npackage implements fast algorithms to address both tasks, the\ncalculation of isotopic distributions for arbitrary sum\nformulas (assuming a HR-MS resolution of roughly 30,000), and\nthe ranked list of sum formulas fitting an observed peak or\nisotopic peak set.",
  "SystemRequirements": "None",
  "License": "GPL-2",
  "StagedInstalll": "no",
  "URL": "https://github.com/sneumann/Rdisop",
  "BugReports": "https://github.com/sneumann/Rdisop/issues/new",
  "biocViews": "ImmunoOncology, MassSpectrometry, Metabolomics",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:32:37 UTC",
  "RemoteUrl": "https://github.com/bioc/Rdisop",
  "RemoteRef": "HEAD",
  "RemoteSha": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-23 15:49:21 UTC",
    "User": "root"
  },
  "Author": "Anton Pervukhin [aut],\nSteffen Neumann [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7899-7192>),\nJan Lisec [ctb] (ORCID: <https://orcid.org/0000-0003-1220-2286>),\nMiao Yu [ctb],\nRoberto Canteri [ctb]",
  "Maintainer": "Steffen Neumann <sneumann@ipb-halle.de>",
  "MD5sum": "7d2b08da7fe936e25be5332003e73831",
  "_user": "bioc",
  "_type": "src",
  "_file": "Rdisop_1.73.0.tar.gz",
  "_fileid": "da30de725a44865c0207f95bea114f64ae12405a8a049f314f7324c9ff64ce70",
  "_filesize": 865487,
  "_sha256": "da30de725a44865c0207f95bea114f64ae12405a8a049f314f7324c9ff64ce70",
  "_created": "2026-06-23T15:49:21.000Z",
  "_published": "2026-06-23T16:05:53.842Z",
  "_jobs": [
    {
      "job": 82997848717,
      "time": 188,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7826067750"
    },
    {
      "job": 82997848785,
      "time": 174,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7826063089"
    },
    {
      "job": 82997848815,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7826070940"
    },
    {
      "job": 82997848782,
      "time": 193,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7826071854"
    },
    {
      "job": 82997848787,
      "time": 177,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7826063191"
    },
    {
      "job": 82997848803,
      "time": 145,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7826324703"
    },
    {
      "job": 82997848749,
      "time": 269,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7826397253"
    },
    {
      "job": 82997848767,
      "time": 133,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7826336059"
    },
    {
      "job": 82997848762,
      "time": 254,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7826381657"
    },
    {
      "job": 82997044207,
      "time": 216,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7825984097"
    },
    {
      "job": 82997848719,
      "time": 140,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7826046702"
    },
    {
      "job": 82997848738,
      "time": 128,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7826041668"
    },
    {
      "job": 82997848746,
      "time": 178,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7826063497"
    },
    {
      "job": 82997848744,
      "time": 199,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7826072014"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 10
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/Rdisop",
  "_commit": {
    "id": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379557
  },
  "_maintainer": {
    "name": "Steffen Neumann",
    "email": "sneumann@ipb-halle.de",
    "login": "sneumann",
    "description": "",
    "uuid": 195385,
    "orcid": "0000-0002-7899-7192"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.73.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.72.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "massspectrometry",
    "metabolomics",
    "mass-spectrometry",
    "cpp"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "sneumann",
      "count": 63,
      "uuid": 195385
    },
    {
      "user": "janlisec",
      "count": 37,
      "uuid": 91542594
    },
    {
      "user": "jwokaty",
      "count": 20,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "yufree",
      "count": 11,
      "uuid": 2356936
    },
    {
      "user": "livia-rasp",
      "count": 5,
      "uuid": 3390392
    },
    {
      "user": "mjhelf",
      "count": 3,
      "uuid": 28405692
    },
    {
      "user": "gregjohnsonjr",
      "count": 2,
      "uuid": 31873199
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "rickhelmus",
      "count": 2,
      "uuid": 37015911
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "kayla-morrell",
      "count": 1,
      "uuid": 32339524
    },
    {
      "user": "grimbough",
      "count": 1,
      "uuid": 971237
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 441,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 8,
  "_devurl": "https://github.com/sneumann/rdisop",
  "_searchresults": 129,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Rdisop.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sneumann/rdisop",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".getElement",
    "addMolecules",
    "decomposeIsotopes",
    "decomposeMass",
    "getFormula",
    "getIsotope",
    "getMass",
    "getMolecule",
    "getMonoisotopic",
    "getScore",
    "getValid",
    "initializeCharges",
    "initializeCHNOPS",
    "initializeCHNOPSMgKCaFe",
    "initializeCHNOPSNaK",
    "initializeElements",
    "initializePSE",
    "isotopeScore",
    "subMolecules"
  ],
  "_datasets": [
    {
      "name": "isotopes",
      "title": "isotope information.",
      "object": "isotopes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "element",
        "isotope",
        "mass",
        "abundance"
      ],
      "rows": 398,
      "table": true,
      "tojson": true
    },
    {
      "name": "mono_masses",
      "title": "Monoisotopic mass information..",
      "object": "mono_masses",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "addMolecules",
      "title": "Add/subtract sum formulas",
      "topics": [
        "addMolecules",
        "subMolecules"
      ]
    },
    {
      "page": "decomposeIsotopes",
      "title": "Mass Decomposition of Isotope Patterns",
      "topics": [
        "decomposeIsotopes",
        "decomposeMass",
        "isotopeScore"
      ]
    },
    {
      "page": "getMolecule",
      "title": "Calculate mass and isotope information for a molecule given as sum formula",
      "topics": [
        "getFormula",
        "getIsotope",
        "getMass",
        "getMolecule",
        "getMonoisotopic",
        "getScore",
        "getValid"
      ]
    },
    {
      "page": "initializeElements",
      "title": "Initialize (a subset of) elements of the periodic system of elements (PSE)",
      "topics": [
        ".getElement",
        "initializeCharges",
        "initializeCHNOPS",
        "initializeCHNOPSMgKCaFe",
        "initializeCHNOPSNaK",
        "initializeElements",
        "initializePSE"
      ]
    },
    {
      "page": "isotopes",
      "title": "isotope information.",
      "topics": [
        "isotopes"
      ]
    },
    {
      "page": "mono_masses",
      "title": "Monoisotopic mass information..",
      "topics": [
        "mono_masses"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/Rdisop/raw/HEAD/README.md",
  "_rundeps": [
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "Rdisop.Rmd",
      "filename": "Rdisop.html",
      "title": "Mass decomposition with the Rdisop package",
      "author": "Steffen Neumann$^\\dagger$, Anton Pervukhin$^\\ddagger$, Sebastian Böcker$^\\ddagger$, $^\\dagger$Leibniz Institute of Plant Biochemistry, sneumann@IPB-Halle.DE, $^\\ddagger$Friedrich-Schiller-University Jena, apervukh@minet.uni-jena.de, boecker@minet.uni-jena.de",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Decomposing isotope patterns",
        "Chemical background",
        "Identification schema",
        "Working with molecules and isotope peaklists",
        "Functions decomposeMass and decomposeIsotopes",
        "Interaction with other BioConductor packages",
        "Acknowledgments",
        "References"
      ],
      "created": "2024-10-15 14:53:17",
      "modified": "2024-11-05 11:20:31",
      "commits": 2
    }
  ],
  "_score": 8.922164716169844,
  "_indexed": true,
  "_nocasepkg": "rdisop",
  "_universes": [
    "bioc",
    "sneumann"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-06-23T15:52:24.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "8590e3d7932cf053dab3750ae89cb06c7d36764754472ec7bb2d730f28deeb83",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-06-23T15:52:35.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "beeac22c4dda827adb18534ac1eb389e03259e1e73373320cdc69e92fe4c954d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-06-23T15:52:44.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "afcf40073746108dc2372c769869de69340be0b2189d5f683f2444d9b0f4aaad",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-06-23T15:52:19.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "3a6b895e91e6837cb46397cd9be98bb387f0923803502f3c76773e807deefc1f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-06-23T16:02:12.000Z",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "8be6cfd42a11c532114a90f285d740d88215a38a9f8d1f5c32fcc4f70aca06ae",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-06-23T16:04:05.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "479be0d875b8cf65bda575c2321b8649de647a5a824591bd3d7810959b1d4160",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-06-23T16:02:32.000Z",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "5b5fef86db18426e2b6c0ffe56ea60bc42cda6951f23b8b133067f2837c80984",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-06-23T16:03:16.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "84ca71b04a1eb331c7df24486832fbe05ae8ab545464a662b78783334a0b4206",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.73.0",
      "date": "2026-06-23T15:51:49.000Z",
      "arch": "emscripten",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "0b08c4f9c8e6ca8ed8c71b6d8bb932f4411332acd21a74dbbdb175248d2dbad7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-06-23T15:50:48.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "decbf718fee98e96ef4f08ec4d18dbe6a8aa60d1c75d5af260ff1933fe8b63c7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-06-23T15:51:24.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "22a4524221facf1f47fd99430b77acd0ba9b19ae1ee9f34fd831dbe984496574",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-06-23T15:51:17.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "1ff60d0970573d201581df8beec9434812b4d17be54a38b5b3b49719c0776f6c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28038131053"
    }
  ]
}