{
  "_id": "6a61d337768d0b54cfc7928b",
  "Package": "Rdisop",
  "Title": "Decomposition of Isotopic Patterns",
  "Version": "1.73.0",
  "Date": "2026-02-23",
  "Authors@R": "c(\nperson(\"Anton\", \"Pervukhin\", , \"apervukh@minet.uni-jena.de\", role = c(\"aut\")),\nperson(\"Steffen\", \"Neumann\", , \"sneumann@ipb-halle.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7899-7192\")),\nperson(\"Jan\", \"Lisec\", , \"jan.lisec@bam.de\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-1220-2286\")),\nperson(\"Miao\", \"Yu\", , \"yufreecas@gmail.com\", role = c(\"ctb\")),\nperson(\"Roberto\", \"Canteri\", , , role = c(\"ctb\"))\n)",
  "Description": "In high resolution mass spectrometry (HR-MS), the measured\nmasses can be decomposed into potential element combinations\n(chemical sum formulas). Where additional mass/intensity\ninformation of respective isotopic peaks is available,\ndecomposition can take this information into account to better\nrank the potential candidate sum formulas. To compare measured\nmass/intensity information with the theoretical distribution of\ncandidate sum formulas, the latter needs to be calculated. This\npackage implements fast algorithms to address both tasks, the\ncalculation of isotopic distributions for arbitrary sum\nformulas (assuming a HR-MS resolution of roughly 30,000), and\nthe ranked list of sum formulas fitting an observed peak or\nisotopic peak set.",
  "SystemRequirements": "None",
  "License": "GPL-2",
  "StagedInstalll": "no",
  "URL": "https://github.com/sneumann/Rdisop",
  "BugReports": "https://github.com/sneumann/Rdisop/issues/new",
  "biocViews": "ImmunoOncology, MassSpectrometry, Metabolomics",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:32:37 UTC",
  "RemoteUrl": "https://github.com/bioc/Rdisop",
  "RemoteRef": "HEAD",
  "RemoteSha": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-23 08:24:13 UTC",
    "User": "root"
  },
  "Author": "Anton Pervukhin [aut],\nSteffen Neumann [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7899-7192>),\nJan Lisec [ctb] (ORCID: <https://orcid.org/0000-0003-1220-2286>),\nMiao Yu [ctb],\nRoberto Canteri [ctb]",
  "Maintainer": "Steffen Neumann <sneumann@ipb-halle.de>",
  "_user": "bioc",
  "_type": "src",
  "_file": "Rdisop_1.73.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/3ea31e2e13acbebb3d4ac4d43be6b00c104224353d3626eaf7ea9423412113af",
  "_filesize": 865455,
  "_sha256": "3ea31e2e13acbebb3d4ac4d43be6b00c104224353d3626eaf7ea9423412113af",
  "_expires": "2026-10-31T08:39:16.000Z",
  "_created": "2026-07-23T08:24:13.000Z",
  "_published": "2026-07-23T08:39:18.876Z",
  "_bioccheck": {
    "error": 0,
    "warning": 3,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168",
  "_status": "success",
  "_upstream": "https://github.com/bioc/Rdisop",
  "_commit": {
    "id": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379557
  },
  "_maintainer": {
    "name": "Steffen Neumann",
    "email": "sneumann@ipb-halle.de",
    "login": "sneumann",
    "description": "",
    "uuid": 195385,
    "orcid": "0000-0002-7899-7192"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 89153948679,
      "time": 160,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8557139416"
    },
    {
      "job": 89153948708,
      "time": 132,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8557130179"
    },
    {
      "job": 89153948717,
      "time": 218,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8557157571"
    },
    {
      "job": 89153948723,
      "time": 131,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8557129895"
    },
    {
      "job": 89153948720,
      "time": 237,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8557163570"
    },
    {
      "job": 89153948695,
      "time": 94,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8557288396"
    },
    {
      "job": 89153948690,
      "time": 302,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8557356944"
    },
    {
      "job": 89153948712,
      "time": 112,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8557272509"
    },
    {
      "job": 89153948685,
      "time": 186,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8557311959"
    },
    {
      "job": 89153376875,
      "time": 216,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8557087551"
    },
    {
      "job": 89153948768,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8557128983"
    },
    {
      "job": 89153948665,
      "time": 134,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8557130512"
    },
    {
      "job": 89153948698,
      "time": 237,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8557163960"
    },
    {
      "job": 89153948682,
      "time": 126,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8557128590"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.73.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.72.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "massspectrometry",
    "metabolomics",
    "mass-spectrometry",
    "cpp"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "sneumann",
      "count": 63,
      "uuid": 195385
    },
    {
      "user": "janlisec",
      "count": 37,
      "uuid": 91542594
    },
    {
      "user": "jwokaty",
      "count": 20,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "yufree",
      "count": 11,
      "uuid": 2356936
    },
    {
      "user": "livia-rasp",
      "count": 5,
      "uuid": 3390392
    },
    {
      "user": "mjhelf",
      "count": 3,
      "uuid": 28405692
    },
    {
      "user": "gregjohnsonjr",
      "count": 2,
      "uuid": 31873199
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "rickhelmus",
      "count": 2,
      "uuid": 37015911
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "kayla-morrell",
      "count": 1,
      "uuid": 32339524
    },
    {
      "user": "grimbough",
      "count": 1,
      "uuid": 971237
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 450,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 1309,
    "source": "https://www.bioconductor.org/packages/stats/bioc/Rdisop"
  },
  "_mentions": 8,
  "_devurl": "https://github.com/sneumann/rdisop",
  "_searchresults": 129,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Rdisop.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sneumann/rdisop",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".getElement",
    "addMolecules",
    "decomposeIsotopes",
    "decomposeMass",
    "getFormula",
    "getIsotope",
    "getMass",
    "getMolecule",
    "getMonoisotopic",
    "getScore",
    "getValid",
    "initializeCharges",
    "initializeCHNOPS",
    "initializeCHNOPSMgKCaFe",
    "initializeCHNOPSNaK",
    "initializeElements",
    "initializePSE",
    "isotopeScore",
    "subMolecules"
  ],
  "_datasets": [
    {
      "name": "isotopes",
      "title": "isotope information.",
      "object": "isotopes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "element",
        "isotope",
        "mass",
        "abundance"
      ],
      "rows": 398,
      "table": true,
      "tojson": true
    },
    {
      "name": "mono_masses",
      "title": "Monoisotopic mass information..",
      "object": "mono_masses",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "addMolecules",
      "title": "Add/subtract sum formulas",
      "topics": [
        "addMolecules",
        "subMolecules"
      ]
    },
    {
      "page": "decomposeIsotopes",
      "title": "Mass Decomposition of Isotope Patterns",
      "topics": [
        "decomposeIsotopes",
        "decomposeMass",
        "isotopeScore"
      ]
    },
    {
      "page": "getMolecule",
      "title": "Calculate mass and isotope information for a molecule given as sum formula",
      "topics": [
        "getFormula",
        "getIsotope",
        "getMass",
        "getMolecule",
        "getMonoisotopic",
        "getScore",
        "getValid"
      ]
    },
    {
      "page": "initializeElements",
      "title": "Initialize (a subset of) elements of the periodic system of elements (PSE)",
      "topics": [
        ".getElement",
        "initializeCharges",
        "initializeCHNOPS",
        "initializeCHNOPSMgKCaFe",
        "initializeCHNOPSNaK",
        "initializeElements",
        "initializePSE"
      ]
    },
    {
      "page": "isotopes",
      "title": "isotope information.",
      "topics": [
        "isotopes"
      ]
    },
    {
      "page": "mono_masses",
      "title": "Monoisotopic mass information..",
      "topics": [
        "mono_masses"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/Rdisop/raw/HEAD/README.md",
  "_rundeps": [
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "Rdisop.Rmd",
      "filename": "Rdisop.html",
      "title": "Mass decomposition with the Rdisop package",
      "author": "Steffen Neumann$^\\dagger$, Anton Pervukhin$^\\ddagger$, Sebastian Böcker$^\\ddagger$, $^\\dagger$Leibniz Institute of Plant Biochemistry, sneumann@IPB-Halle.DE, $^\\ddagger$Friedrich-Schiller-University Jena, apervukh@minet.uni-jena.de, boecker@minet.uni-jena.de",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Decomposing isotope patterns",
        "Chemical background",
        "Identification schema",
        "Working with molecules and isotope peaklists",
        "Functions decomposeMass and decomposeIsotopes",
        "Interaction with other BioConductor packages",
        "Acknowledgments",
        "References"
      ],
      "created": "2024-10-15 14:53:17",
      "modified": "2024-11-05 11:20:31",
      "commits": 2
    }
  ],
  "_score": 9.0391043627206,
  "_indexed": true,
  "_nocasepkg": "rdisop",
  "_universes": [
    "bioc",
    "sneumann"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-23T08:26:33.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/c8668bbc42084393632672b44fc7216279c6caae1247b7755598f4fb668f3c17",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-23T08:27:53.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/9e11191a9b96b79e330d6545f482449516732b2b69eb408bcb2cf7ddc2feb832",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-23T08:26:32.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/5844181cb0d0beb5031e8122d4371dc8b0a655b64eea81ce5d7559f59e20ef71",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-23T08:28:21.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/a4334f9555115d296a869445f1d7d6e1f48cb77291f9fe131eff28acb4d36bd5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-23T08:34:56.000Z",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/8389381e8bc4e958ff95a0418f7be6a1c70d761fab340f2d5470dad2788d8eb5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-23T08:37:15.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/7289cbe376a3802c53172f5175708ef204a33bd6ff1d533178b4dbcce293423d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-23T08:33:55.000Z",
      "arch": "aarch64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/3e6c5134b7c7b418b42e35a484e1a097d6601c2b5d61261bbfefdfc6c4083021",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-23T08:35:24.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/596e52443f68304ef656d1d10005a473f26854e357b63115de42c7bfa07b857b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.73.0",
      "date": "2026-07-23T08:26:30.000Z",
      "arch": "emscripten",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/45682fde8c1ccdcf6677a7bc1563947793387abf05063ed9dff99fe6b5a70da0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-23T08:25:45.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/9af9aec26fb883407999a7efd785e830654f655429ccc60fbc7a4b4931660bef",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-23T08:26:23.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/3c215a79ae1fbbbe83230c593864083d65563f77db20f404cf7d614292c46c1c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-23T08:25:46.000Z",
      "arch": "x86_64",
      "commit": "7dc52a1ebd79c31cd8b92f986064b4291addb193",
      "fileid": "https://r2.ropensci.org/a0b35dfb884250a11404ef6388ab4fd57006deceb413359ebdfac1ecaf6be251",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990917168"
    }
  ]
}