{
  "_id": "6a49421018cdde069385e3b1",
  "Package": "RUVnormalize",
  "Title": "RUV for normalization of expression array data",
  "Version": "1.47.0",
  "Date": "2013-11-10",
  "Author": "Laurent Jacob",
  "Maintainer": "Laurent Jacob <laurent.jacob@univ-lyon1.fr>",
  "Description": "RUVnormalize is meant to remove unwanted variation from\ngene expression data when the factor of interest is not\ndefined, e.g., to clean up a dataset for general use or to do\nany kind of unsupervised analysis.",
  "License": "GPL-3",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "biocViews": "StatisticalMethod, Normalization",
  "BuildVignettes": "true",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:32 UTC",
  "RemoteUrl": "https://github.com/bioc/RUVnormalize",
  "RemoteRef": "HEAD",
  "RemoteSha": "8484da0337899a05d7e2e9356543699ad74b1a1f",
  "Packaged": {
    "Date": "2026-07-04 09:05:34 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "RUVnormalize_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/c6280124feb6ce3366987c4f9ed87c5b579930bb26a87120354222c666998150",
  "_filesize": 315820,
  "_sha256": "c6280124feb6ce3366987c4f9ed87c5b579930bb26a87120354222c666998150",
  "_expires": "2026-10-12T17:25:34.000Z",
  "_created": "2026-07-04T09:05:34.000Z",
  "_published": "2026-07-04T17:25:36.047Z",
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367",
  "_status": "success",
  "_upstream": "https://github.com/bioc/RUVnormalize",
  "_commit": {
    "id": "8484da0337899a05d7e2e9356543699ad74b1a1f",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379972
  },
  "_maintainer": {
    "name": "Laurent Jacob",
    "email": "laurent.jacob@univ-lyon1.fr",
    "login": "laurent-jacob",
    "description": "",
    "uuid": 32868503
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85152048006,
      "time": 134,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8080314897"
    },
    {
      "job": 85152048048,
      "time": 173,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8080319735"
    },
    {
      "job": 85152047926,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080314989"
    },
    {
      "job": 85152048127,
      "time": 79,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8080609798"
    },
    {
      "job": 85152047847,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080610732"
    },
    {
      "job": 85152047807,
      "time": 153,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080298177"
    },
    {
      "job": 85152047946,
      "time": 96,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8080310542"
    },
    {
      "job": 85152047815,
      "time": 89,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8080309638"
    },
    {
      "job": 85152047942,
      "time": 89,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8080309479"
    },
    {
      "job": 85152047828,
      "time": 77,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080308169"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "RUVnormalizeData",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "spams",
      "role": "Enhances"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "statisticalmethod",
    "normalization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 2,
  "_searchresults": 35,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/RUVnormalize.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "clScore",
    "iterativeRUV",
    "naiveRandRUV",
    "naiveReplicateRUV",
    "svdPlot"
  ],
  "_help": [
    {
      "page": "clScore",
      "title": "Computes a distance between two partitions of the same data",
      "topics": [
        "clScore"
      ]
    },
    {
      "page": "iterativeRUV",
      "title": "Remove unwanted variation from a gene expression matrix using control genes, optionally replicate samples, and iterative estimates of the factor of interest",
      "topics": [
        "iterativeRUV"
      ]
    },
    {
      "page": "naiveRandRUV",
      "title": "Remove unwanted variation from a gene expression matrix using negative control genes",
      "topics": [
        "naiveRandRUV"
      ]
    },
    {
      "page": "naiveReplicateRUV",
      "title": "Remove unwanted variation from a gene expression matrix using replicate samples",
      "topics": [
        "naiveReplicateRUV"
      ]
    },
    {
      "page": "svdPlot",
      "title": "Plot the data projected into the space spanned by their first two principal components",
      "topics": [
        "svdPlot"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "RUVnormalizeData"
  ],
  "_vignettes": [
    {
      "source": "RUVnormalize.Rnw",
      "filename": "RUVnormalize.pdf",
      "title": "RUVnormalize",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Software features",
        "Case studies",
        "Session Information"
      ],
      "created": "2014-08-22 20:00:17",
      "modified": "2016-02-02 08:36:58",
      "commits": 2
    }
  ],
  "_score": 4.146128035678238,
  "_indexed": true,
  "_nocasepkg": "ruvnormalize",
  "_universes": [
    "bioc",
    "laurent-jacob"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-04T09:08:21.000Z",
      "distro": "resolute",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/a851809cabccad26f24733f5897499eac9f4cb42c8b8fa2530f99695e468616d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-04T09:07:39.000Z",
      "distro": "resolute",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/4761f808f79676fa88dc68730f1e8ed63913b8a9d796c2eb25a9c66cfe0c2c23",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-04T09:50:12.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/6b33665b129260855f92b486804805c7c2d2f2d1d30f2047c5bfce8e2a9e3417",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-04T09:50:19.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/e00a03bc04660e79029ef0f0bb3105fc7614e814c54eaaf56741367e9216a4e7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-04T09:07:24.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/3cfc1687e7e22dbf3e38cd372af21aacb150e86ff73faf2dab7a70f8343dd642",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T09:06:50.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/6bc292d546bfd33f6b61725fbd2747c531942d38beb5de425714cc323d9cbcbe",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T09:06:55.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/05836a9b5e3316cfff73000db84facf130c266bc0c7c8088cbb2c62185e3f43f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T09:06:40.000Z",
      "commit": "8484da0337899a05d7e2e9356543699ad74b1a1f",
      "fileid": "https://r2.ropensci.org/4f94be10f7808aa3b8458d41209d1dfbf3ebb4695ccde73ee0946d64202ba762",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701342367"
    }
  ]
}