{ "_id": "6a1aa9511d7bb097a09d4d06", "Package": "RTCGAToolbox", "Type": "Package", "Title": "A new tool for exporting TCGA Firehose data", "Version": "2.43.0", "Authors@R": "c(\nperson(\"Mehmet\", \"Samur\", email = \"rtcgatoolbox@gmail.com\",\nrole = \"aut\"),\nperson(\"Marcel\", \"Ramos\", email = \"marcel.ramos@sph.cuny.edu\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Ludwig\", \"Geistlinger\", role = \"ctb\"))", "Description": "Managing data from large scale projects such as The Cancer\nGenome Atlas (TCGA) for further analysis is an important and\ntime consuming step for research projects. Several efforts,\nsuch as Firehose project, make TCGA pre-processed data publicly\navailable via web services and data portals but it requires\nmanaging, downloading and preparing the data for following\nsteps. We developed an open source and extensible R based data\nclient for Firehose pre-processed data and demonstrated its use\nwith sample case studies. Results showed that RTCGAToolbox\ncould improve data management for researchers who are\ninterested with TCGA data. In addition, it can be integrated\nwith other analysis pipelines for following data analysis.", "License": "GPL-2", "biocViews": "DifferentialExpression, GeneExpression, Sequencing", "URL": "http://mksamur.github.io/RTCGAToolbox/", "BugReports": "https://github.com/mksamur/RTCGAToolbox/issues", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "Collate": "'RTCGAToolbox-Class.R' 'RTCGAToolbox.R' 'utils.R'\n'biocExtract.R' 'data.R' 'getBroadSubtypes.R'\n'getFirehoseAnalyzeDates.R' 'getFirehoseData.R'\n'getFirehoseDatasets.R' 'getFirehoseRunningDates.R'\n'getGISTICPeaks.R' 'getLinks.R' 'getMutationRate.R'\n'makeSummarizedExperimentFromGISTIC.R' 'selectType.R'", "Encoding": "UTF-8", "Date": "2024-12-18", "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:41:20 UTC", "RemoteUrl": "https://github.com/bioc/RTCGAToolbox", "RemoteRef": "HEAD", "RemoteSha": "7e5f79d74898d303eb1bde7dd9dd1d9e77a5df2a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 06:54:33 UTC", "User": "root" }, "Author": "Mehmet Samur [aut],\nMarcel Ramos [aut, cre] (ORCID:\n),\nLudwig Geistlinger [ctb]", "Maintainer": "Marcel Ramos ", "MD5sum": "8669babf93a2f20086fa0714c6d592ae", "_user": "bioc", "_type": "src", "_file": "RTCGAToolbox_2.43.0.tar.gz", "_fileid": "4929f561d374a2c6e3b7c7077f46355beeb03d42c48af57991ac42fcd7132bb6", "_filesize": 2374169, "_sha256": "4929f561d374a2c6e3b7c7077f46355beeb03d42c48af57991ac42fcd7132bb6", "_created": "2026-05-30T06:54:33.000Z", "_published": "2026-05-30T09:09:37.095Z", "_jobs": [ { "job": 78631688677, "time": 272, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7306268381" }, { "job": 78631688683, "time": 437, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7306287867" }, { "job": 78631688681, 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