{
  "_id": "6a494fcbf6c47c441949a8ca",
  "Package": "RRHO",
  "Type": "Package",
  "Title": "Inference on agreement between ordered lists",
  "Version": "1.53.0",
  "Date": "2014-06-26",
  "Author": "Jonathan Rosenblatt and Jason Stein",
  "Maintainer": "Jonathan Rosenblatt <john.ros.work@gmail.com>",
  "Description": "The package is aimed at inference on the amount of\nagreement in two sorted lists using the Rank-Rank\nHypergeometric Overlap test.",
  "License": "GPL-2",
  "biocViews": "Genetics, SequenceMatching, Microarray, Transcription",
  "Packaged": {
    "Date": "2026-07-02 09:25:05 UTC",
    "User": "root"
  },
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:37:59 UTC",
  "RemoteUrl": "https://github.com/bioc/RRHO",
  "RemoteRef": "HEAD",
  "RemoteSha": "edbc3430f30a2c65eafe3ef66a176f04707df960",
  "NeedsCompilation": "no",
  "_user": "bioc",
  "_type": "src",
  "_file": "RRHO_1.53.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/fd4aa92951b6d8f72052ce645454fb451e9f3723af4a5f9b6cd7fb9c81e99a22",
  "_filesize": 703331,
  "_sha256": "fd4aa92951b6d8f72052ce645454fb451e9f3723af4a5f9b6cd7fb9c81e99a22",
  "_expires": "2026-10-12T18:24:09.000Z",
  "_created": "2026-07-02T09:25:05.000Z",
  "_published": "2026-07-04T18:24:11.310Z",
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096",
  "_status": "success",
  "_upstream": "https://github.com/bioc/RRHO",
  "_commit": {
    "id": "edbc3430f30a2c65eafe3ef66a176f04707df960",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379879
  },
  "_maintainer": {
    "name": "Jonathan Rosenblatt",
    "email": "john.ros.work@gmail.com"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85156041079,
      "time": 161,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8034480911"
    },
    {
      "job": 85156041026,
      "time": 127,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8034467653"
    },
    {
      "job": 85156041011,
      "time": 178,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034487875"
    },
    {
      "job": 85156040943,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8034452415"
    },
    {
      "job": 85156040911,
      "time": 85,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034451357"
    },
    {
      "job": 85156040767,
      "time": 198,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8034415095"
    },
    {
      "job": 85156041071,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8034455598"
    },
    {
      "job": 85156040989,
      "time": 61,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8034441657"
    },
    {
      "job": 85156041030,
      "time": 55,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8034438797"
    },
    {
      "job": 85156041058,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034446628"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "grid",
      "role": "Depends"
    },
    {
      "package": "VennDiagram",
      "role": "Imports"
    },
    {
      "package": "lattice",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.53.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.52.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "genetics",
    "sequencematching",
    "microarray",
    "transcription"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 444,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 22,
  "_searchresults": 65,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/RRHO.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "pvalRRHO",
    "RRHO",
    "RRHOComparison"
  ],
  "_datasets": [
    {
      "name": "HNP",
      "title": "RRHO comparison data sets.",
      "object": "lists",
      "file": "lists.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "GeneIdentifier",
        "RankingVal"
      ],
      "rows": 15144,
      "table": true,
      "tojson": true
    },
    {
      "name": "My",
      "title": "RRHO comparison data sets.",
      "object": "lists",
      "file": "lists.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "GeneIdentifier",
        "RankingVal"
      ],
      "rows": 15144,
      "table": true,
      "tojson": true
    },
    {
      "name": "Sestan",
      "title": "RRHO comparison data sets.",
      "object": "lists",
      "file": "lists.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "GeneIdentifier",
        "RankingVal"
      ],
      "rows": 15144,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "RRHO-package",
      "title": "Test overlap using the Rank-Rank Hypergeometric test",
      "topics": [
        "RRHO-package"
      ]
    },
    {
      "page": "HNP",
      "title": "RRHO comparison data sets.",
      "topics": [
        "HNP",
        "My",
        "Sestan"
      ]
    },
    {
      "page": "pvalRRHO",
      "title": "Compute the significance of the overlap between two lists",
      "topics": [
        "pvalRRHO"
      ]
    },
    {
      "page": "RRHO",
      "title": "Rank-Rank Hypergeometric Overlap Test",
      "topics": [
        "RRHO"
      ]
    },
    {
      "page": "RRHOComparison",
      "title": "Compares two RRHO maps to a third",
      "topics": [
        "RRHOComparison"
      ]
    }
  ],
  "_rundeps": [
    "formatR",
    "futile.logger",
    "futile.options",
    "lambda.r",
    "VennDiagram"
  ],
  "_vignettes": [
    {
      "source": "RRHO.Rnw",
      "filename": "RRHO.pdf",
      "title": "RRHO",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:31:33",
      "modified": "2014-07-01 12:34:33",
      "commits": 3
    }
  ],
  "_score": 5.113943352306837,
  "_indexed": true,
  "_nocasepkg": "rrho",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.53.0",
      "date": "2026-07-02T09:27:16.000Z",
      "distro": "resolute",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/a472b035daaa20ea40a4d9eb82789ae14e8fc41d203388ecc49514ea2261f9ca",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.53.0",
      "date": "2026-07-02T09:28:07.000Z",
      "distro": "resolute",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/2011e3d5ad12e9882ffb2905ff3bc71c8e995f9d6df03443763f576cc8ff3377",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:41.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/6cf637e10c43f690d0b4303ee4a4996c7b66446e3a0bfa3791d32bf1f7b28b4b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:35.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/6a4e8b404093323cd8099225d7ad030213c66de4485d0dcf09fd579d8a107af4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:59.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/0365c06d33e798ef5afc125a6547cca831a68b5343fb00d5a2a4a395820696c2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:08.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/02ab8f73997d85f7f16f5ad9df73de79cb3394329c58572ca30bbf98cca98da7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:02.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/75bd93d4721a2ebbe46ef78b9b46d209d2d969eaf6c1a6679cf1cc9856dfb599",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.53.0",
      "date": "2026-07-02T09:26:16.000Z",
      "commit": "edbc3430f30a2c65eafe3ef66a176f04707df960",
      "fileid": "https://r2.ropensci.org/24259a6c62fe5888afbcf49a97e299719b4dba464fadb57cbfbd916feae81a4a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28579415096"
    }
  ]
}