{
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  "Package": "RNAshapeQC",
  "Type": "Package",
  "Title": "RNA Coverage-Shape-Based Quality Control Metrics",
  "Version": "1.1.0",
  "Authors@R": "c(\nperson(\"Miyeon\", \"Yeon\",\nemail = \"myeon@uthsc.edu\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-1618-0643\")),\nperson(\"Won-Young\", \"Choi\",\nemail = \"wchoi11@uthsc.edu\",\nrole = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0009-0003-8276-2235\")),\nperson(\"Jin Young\", \"Lee\",\nemail = \"jlee307@uthsc.edu\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5366-7488\")),\nperson(\"Katherine A.\", \"Hoadley\",\nemail = \"hoadley@med.unc.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1216-477X\")),\nperson(\"D. Neil\", \"Hayes\",\nemail = \"Neil.Hayes@uthsc.edu\",\nrole = c(\"aut\", \"fnd\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-6203-7771\")),\nperson(\"Hyo Young\", \"Choi\",\nemail = \"hyoyoung.choi@uthsc.edu\",\nrole = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7627-8493\"))\n)",
  "Description": "RNAshapeQC provides coverage-shape-based quality control\n(QC) metrics for mRNA-seq and total RNA-seq data. It supports\nper-gene pileup construction from BAM files as well as toy\ndatasets for quick-start examples. The package implements\nprotocol-specific metrics, including decay rate (DR),\ndegradation score (DS), mean coverage depth (MCD), window\ncoefficient of variation (wCV), area under the curve (AUC), and\nshape-based sample-level indices. RNAshapeQC also includes\nHPC-friendly functions for per-gene batch processing and\ncross-study pileup generation. This package enables\ninterpretable, protocol-specific QC assessments for diverse\nRNA-seq workflows.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "biocViews": "RNASeq, QualityControl, Coverage, Transcriptomics,\nSequencing",
  "URL": "https://github.com/hyochoi/RNAshapeQC",
  "BugReports": "https://github.com/hyochoi/RNAshapeQC/issues",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:06:41 UTC",
  "RemoteUrl": "https://github.com/bioc/RNAshapeQC",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 06:54:52 UTC",
    "User": "root"
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  "Author": "Miyeon Yeon [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-1618-0643>),\nWon-Young Choi [aut, cph] (ORCID:\n<https://orcid.org/0009-0003-8276-2235>),\nJin Young Lee [ctb] (ORCID: <https://orcid.org/0000-0002-5366-7488>),\nKatherine A. Hoadley [aut] (ORCID:\n<https://orcid.org/0000-0002-1216-477X>),\nD. Neil Hayes [aut, fnd, cph] (ORCID:\n<https://orcid.org/0000-0001-6203-7771>),\nHyo Young Choi [aut, cph] (ORCID:\n<https://orcid.org/0000-0002-7627-8493>)",
  "Maintainer": "Miyeon Yeon <myeon@uthsc.edu>",
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  "_created": "2026-05-30T06:54:52.000Z",
  "_published": "2026-05-30T09:09:18.647Z",
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        "mRNA-seq",
        "Total RNA-seq",
        "Recommended analysis pipeline",
        "Installation",
        "Data Processing",
        "Base-level coverage",
        "Processed matrices",
        "Data Analysis",
        "Toy datasets",
        "mRNA-seq example",
        "Total RNA-seq example",
        "Interoperability with Bioconductor",
        "Summary",
        "Session Information"
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