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At Step 2,\nRNA-sense outputs the groups of differentially expressed\ntranscripts, which are up- or downregulated in the mutant\ncompared to the wild-type at each time point. At Step 3,\nCorrelations (Fisher's exact test) between the outputs of Step\n1 (switch up- and switch down- time profile groups) and the\noutputs of Step2 (differentially expressed transcript groups)\nare calculated. The results of the correlation analysis are\nprinted as two-dimensional color plot, with time profiles and\ndifferential expression groups at y- and x-axis, respectively,\nand facilitates the biological interpretation of the data.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "6.1.1", "BugReports": "https://github.com/marcusrosenblatt/RNAsense", "biocViews": "RNASeq, GeneExpression, DifferentialExpression", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:51:23 UTC", "RemoteUrl": "https://github.com/bioc/RNAsense", "RemoteRef": "HEAD", "RemoteSha": "329cc51125c26c3d432d04dc7f71ce033167eb7e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-18 08:36:16 UTC", "User": "root" }, "Author": "Marcus Rosenblatt [cre],\nGao Meijang [aut],\nHelge Hass [aut],\nDaria Onichtchouk [aut]", "Maintainer": "Marcus Rosenblatt ", "_user": "bioc", "_type": 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