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  "Title": "Analysis of Time-Resolved RNA-Seq Data",
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  "Description": "RNA-sense tool compares RNA-seq time curves in two\nexperimental conditions, i.e. wild-type and mutant, and works\nin three steps. At Step 1, it builds expression profile for\neach transcript in one condition (i.e. wild-type) and tests if\nthe transcript abundance grows or decays significantly. Dynamic\ntranscripts are then sorted to non-overlapping groups (time\nprofiles) by the time point of switch up or down. At Step 2,\nRNA-sense outputs the groups of differentially expressed\ntranscripts, which are up- or downregulated in the mutant\ncompared to the wild-type at each time point. At Step 3,\nCorrelations (Fisher's exact test) between the outputs of Step\n1 (switch up- and switch down- time profile groups) and the\noutputs of Step2 (differentially expressed transcript groups)\nare calculated. The results of the correlation analysis are\nprinted as two-dimensional color plot, with time profiles and\ndifferential expression groups at y- and x-axis, respectively,\nand facilitates the biological interpretation of the data.",
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  "biocViews": "RNASeq, GeneExpression, DifferentialExpression",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:51:23 UTC",
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  "Author": "Marcus Rosenblatt [cre],\nGao Meijang [aut],\nHelge Hass [aut],\nDaria Onichtchouk [aut]",
  "Maintainer": "Marcus Rosenblatt <marcus.rosenblatt@gmail.com>",
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    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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    "description": "I am interested in music, chess, volleyball and systems biology...",
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  "_cranurl": false,
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    "getSwitch",
    "outputGeneTables",
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      "title": "Time resolved RNA seq data for early zygotic development of zebra fish.",
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      "title": "Detect fold changes",
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        "Installation",
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      "created": "2019-08-03 11:00:29",
      "modified": "2019-10-22 12:19:52",
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