{ "_id": "6a5b061c9baadeef8ab4a429", "Package": "RGSEA", "Type": "Package", "Title": "Random Gene Set Enrichment Analysis", "Version": "1.47.0", "Date": "2014-04-22", "Author": "Chengcheng Ma", "biocViews": "GeneSetEnrichment, StatisticalMethod, Classification", "Maintainer": "Chengcheng Ma ", "Description": "Combining bootstrap aggregating and Gene set enrichment\nanalysis (GSEA), RGSEA is a classfication algorithm with high\nrobustness and no over-fitting problem. It performs well\nespecially for the data generated from different exprements.", "License": "GPL(>=3)", "VignetteBuilder": "knitr", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:39:17 UTC", "RemoteUrl": "https://github.com/bioc/RGSEA", "RemoteRef": "HEAD", "RemoteSha": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-18 04:45:30 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "RGSEA_1.47.0.tar.gz", "_fileid": "https://r2.ropensci.org/96970c8f7f8623a43cf225e9811527a1cc06a603fad712e4286d8fe4f866a391", "_filesize": 1905881, "_sha256": "96970c8f7f8623a43cf225e9811527a1cc06a603fad712e4286d8fe4f866a391", "_expires": "2026-10-26T04:50:34.000Z", "_created": "2026-07-18T04:45:30.000Z", "_published": "2026-07-18T04:50:35.982Z", "_bioccheck": { "error": 1, "warning": 3, "note": 10 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263", "_status": "success", "_upstream": "https://github.com/bioc/RGSEA", "_commit": { "id": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379957 }, "_maintainer": { "name": "Chengcheng Ma", "email": "ccma@sibs.ac.cn", "login": "sibscc", "description": "", "uuid": 6046873 }, "_distro": "resolute", "_jobs": [ { "job": 88044654652, "time": 210, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8425505159" }, { "job": 88044654688, "time": 200, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8425503265" }, { "job": 88044654696, "time": 269, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8425514268" }, { "job": 88044654669, "time": 91, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8425494535" }, { "job": 88044654687, "time": 91, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8425494715" }, { "job": 88044284805, "time": 275, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8425471299" }, { "job": 88044654661, "time": 118, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8425490481" }, { "job": 88044654684, "time": 76, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8425484052" }, { "job": 88044654670, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8425485445" }, { "job": 88044654679, "time": 88, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8425486191" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "GEOquery", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.47.0", "bioc": "3.24" }, { "branch": "release", "version": "1.46.0", "bioc": "3.23" } ], "_topics": [ "genesetenrichment", "statisticalmethod", "classification" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 447, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 490, "source": "https://www.bioconductor.org/packages/stats/bioc/RGSEA" }, "_mentions": 1, "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/RGSEA.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "RGSEAfix", "RGSEApredict", "RGSEAsd" ], "_datasets": [ { "name": "cmap", "title": "Data from Connectivity map build 01", "object": "cmap", "file": "cmap.rda", "class": [ "matrix", "array" ], "fields": [ "thioridazine", "tretinoin", "prochlorperazine", "chlorpromazine", "vorinostat", "sirolimus" ], "rows": 22268, "table": true, "tojson": true }, { "name": "e1", "title": "Data from GDS4102", "object": "e1", "file": "e1.rda", "class": [ "matrix", "array" ], "fields": [ "tumor", "normal" ], "rows": 54675, "table": true, "tojson": true }, { "name": "e2", "title": "Data from GDS4100", "object": "e2", "file": "e2.rda", "class": [ "matrix", "array" ], "fields": [ "tumor", "tumor", "normal", "normal" ], "rows": 54675, "table": true, "tojson": true } ], "_help": [ { "page": "RGSEA-package", "title": "Random Gene Set Enrichment Analysis (RGSEA)", "topics": [ "RGSEA-package", "RGSEA" ] }, { "page": "cmap", "title": "Data from Connectivity map build 01", "topics": [ "cmap" ] }, { "page": "e1", "title": "Data from GDS4102", "topics": [ "e1" ] }, { "page": "e2", "title": "Data from GDS4100", "topics": [ "e2" ] }, { "page": "RGSEAfix", "title": "Random Gene Set Enrichment Analysis with fixed number of features", "topics": [ "RGSEAfix" ] }, { "page": "RGSEApredict", "title": "Predict the class of the query data with the result of RGSEA functions", "topics": [ "RGSEApredict" ] }, { "page": "RGSEAsd", "title": "Random Gene Set Enrichment Analysis features selected based on standard deviation from the mean value", "topics": [ "RGSEAsd" ] } ], "_rundeps": [ "BiocGenerics", "generics" ], "_vignettes": [ { "source": "RGSEA.Rnw", "filename": "RGSEA.pdf", "title": "Introduction to RGSEA", "engine": "knitr::knitr", "headings": [ "1 Introduction", "2 Example Datset Description", "3 Running RGSEA", "4 References" ], "created": "2014-06-07 00:22:32", "modified": "2014-06-07 00:22:32", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "rgsea", "_universes": [ "bioc", "sibscc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.47.0", "date": "2026-07-18T04:48:45.000Z", "distro": "resolute", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/b02c32eb909280c9cc780657e23f4a0ade4f5b76423fc80e1224b3586172be17", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.6.1", "os": "linux", "version": "1.47.0", "date": "2026-07-18T04:49:57.000Z", "distro": "resolute", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/c449cff66034424ab552610f6dcefddd828ad296913d1b07844629aed8ae29c0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.5.3", "os": "mac", "version": "1.47.0", "date": "2026-07-18T04:47:58.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/c530853e4350d9ee8a0422bd0079ec43d4232ad3f8fee7ec1a93d6ffed389f8c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.6.1", "os": "mac", "version": "1.47.0", "date": "2026-07-18T04:47:58.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/a2c78e3de8f2c809390074ac28c27b20243686e76ff62be133d47758f518c1ab", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.6.0", "os": "wasm", "version": "1.47.0", "date": "2026-07-18T04:47:47.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/aa85818b79fd6baedea390837a65d2d5ae355dd9c524b0a935579653f8fdde7d", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.7.0", "os": "win", "version": "1.47.0", "date": "2026-07-18T04:46:42.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/2ff8af677bffdf7fb6278212fdbe6d923335edc4ffdc4c081c9b1500ee2d69d7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.5.3", "os": "win", "version": "1.47.0", "date": "2026-07-18T04:46:52.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/1e381b103d415f5840df98b0d0ed80c1f27685812cf086c6bfa304f53424b5b7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" }, { "r": "4.6.1", "os": "win", "version": "1.47.0", "date": "2026-07-18T04:46:53.000Z", "commit": "eba6181a285f0956ea39e1ab72f7eea5a688c88e", "fileid": "https://r2.ropensci.org/f577da5d11dfb2679e59c142ab940fe584ecb681450a2e7d0b91e8eee7d6099a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29630955263" } ] }