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  "Title": "Functions to Access and Control Cytoscape",
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  "Date": "2025-12-02",
  "Authors@R": "c(person(\"Jing\", \"Chen\", role = \"cre\",\nemail = \"jingjingbic@gmail.com\"),\nperson(\"Alex\", \"Pico\", role = \"aut\",\nemail = \"alex.pico@gladstone.ucsf.edu\",\ncomment = c(ORCID = \"0000-0001-5706-2163\")),\nperson(\"Tanja\", \"Muetze\", role = \"aut\",\nemail = \"tanja.muetze14@alumni.imperial.ac.uk\"),\nperson(\"Paul\", \"Shannon\", role = \"aut\",\nemail = \"pshannon@systemsbiology.org\"),\nperson(\"Ruth\", \"Isserlin\", role = \"ctb\"),\nperson(\"Shraddha\", \"Pai\", role = \"ctb\"),\nperson(\"Julia\", \"Gustavsen\", role = \"ctb\"),\nperson(\"Georgi\", \"Kolishovski\", role = \"ctb\"),\nperson(\"Yihang\", \"Xin\", role = \"ctb\",\nemail = \"xinsg0@gmail.com\")\n)",
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  "Description": "Vizualize, analyze and explore networks using Cytoscape\nvia R. Anything you can do using the graphical user interface\nof Cytoscape, you can now do with a single RCy3 function.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/cytoscape/RCy3",
  "BugReports": "https://github.com/cytoscape/RCy3/issues",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:42:06 UTC",
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    "extra/citation.json",
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    "addAnnotationBoundedText",
    "addAnnotationImage",
    "addAnnotationShape",
    "addAnnotationText",
    "addCyEdges",
    "addCyNodes",
    "AddToGroup",
    "analyzeNetwork",
    "applyFilter",
    "bundleEdges",
    "checkNotebookIsRunning",
    "checkRunningRemote",
    "clearEdgeBends",
    "clearEdgePropertyBypass",
    "clearNetworkCenterBypass",
    "clearNetworkPropertyBypass",
    "clearNetworkZoomBypass",
    "clearNodeOpacityBypass",
    "clearNodePropertyBypass",
    "clearSelection",
    "cloneNetwork",
    "closeSession",
    "collapseGroup",
    "commandEcho",
    "commandOpenDialog",
    "commandPause",
    "commandQuit",
    "commandRunFile",
    "commandsAPI",
    "commandsGET",
    "commandsHelp",
    "commandSleep",
    "commandsPOST",
    "commandsRun",
    "copyVisualStyle",
    "createColumnFilter",
    "createCompositeFilter",
    "createCytoscapejsFromNetwork",
    "createDegreeFilter",
    "createGraphFromNetwork",
    "createGroup",
    "createGroupByColumn",
    "createIgraphFromNetwork",
    "createNetworkFromCytoscapejs",
    "createNetworkFromDataFrames",
    "createNetworkFromGraph",
    "createNetworkFromIgraph",
    "createSubnetwork",
    "createView",
    "createVisualStyle",
    "cybrowserClose",
    "cybrowserDialog",
    "cybrowserHide",
    "cybrowserList",
    "cybrowserSend",
    "cybrowserShow",
    "cybrowserVersion",
    "cyrestAPI",
    "cyrestDELETE",
    "cyrestGET",
    "cyrestPOST",
    "cyrestPUT",
    "cytoscapeApiVersions",
    "cytoscapeFreeMemory",
    "cytoscapeMemoryStatus",
    "cytoscapeNumberOfCores",
    "cytoscapePing",
    "cytoscapeVersionInfo",
    "deleteAllNetworks",
    "deleteAllVisualStyle",
    "deleteAnnotation",
    "deleteDuplicateEdges",
    "deleteGroup",
    "deleteNetwork",
    "deleteSelectedEdges",
    "deleteSelectedNodes",
    "deleteSelfLoops",
    "deleteStyleMapping",
    "deleteTableColumn",
    "deleteVisualStyle",
    "diffusionAdvanced",
    "diffusionBasic",
    "disableApp",
    "dockPanel",
    "doInitializeSandbox",
    "doRequestRemote",
    "doSetSandbox",
    "enableApp",
    "expandGroup",
    "exportFilters",
    "exportImage",
    "exportJPG",
    "exportNetwork",
    "exportNetworkToNDEx",
    "exportPDF",
    "exportPNG",
    "exportPS",
    "exportSVG",
    "exportVisualStyles",
    "findRemoteCytoscape",
    "fitContent",
    "floatPanel",
    "getAbsSandboxPath",
    "getAllEdges",
    "getAllNodes",
    "getAllStyleMappings",
    "getAnnotationList",
    "getAppInformation",
    "getAppStatus",
    "getAppUpdates",
    "getArrowShapes",
    "getAvailableApps",
    "getBackgroundColorDefault",
    "getBrowserClientChannel",
    "getBrowserClientJs",
    "getCollectionList",
    "getCollectionName",
    "getCollectionNetworks",
    "getCollectionSuid",
    "getCurrentSandbox",
    "getCurrentSandboxName",
    "getCurrentSandboxPath",
    "getCurrentStyle",
    "getDefaultSandbox",
    "getDefaultSandboxPath",
    "getDisabledApps",
    "getEdgeColor",
    "getEdgeCount",
    "getEdgeInfo",
    "getEdgeLineStyle",
    "getEdgeLineWidth",
    "getEdgeProperty",
    "getEdgeSelectionColorDefault",
    "getEdgeTargetArrowShape",
    "getFilterList",
    "getFirstNeighbors",
    "getGroupInfo",
    "getInstalledApps",
    "getJupyterBridgeURL",
    "getLayoutNameMapping",
    "getLayoutNames",
    "getLayoutPropertyNames",
    "getLayoutPropertyType",
    "getLayoutPropertyValue",
    "getLineStyles",
    "getNetworkCenter",
    "getNetworkCount",
    "getNetworkList",
    "getNetworkName",
    "getNetworkNDExId",
    "getNetworkProperty",
    "getNetworkSuid",
    "getNetworkViews",
    "getNetworkViewSuid",
    "getNetworkZoom",
    "getNodeColor",
    "getNodeCount",
    "getNodeHeight",
    "getNodeLabelPosition",
    "getNodeLabelPositionDefault",
    "getNodePosition",
    "getNodeProperty",
    "getNodeSelectionColorDefault",
    "getNodeShapes",
    "getNodeSize",
    "getNodeWidth",
    "getNotebookIsRunning",
    "getSandboxReinitialize",
    "getSelectedEdgeCount",
    "getSelectedEdges",
    "getSelectedNodeCount",
    "getSelectedNodes",
    "getStyleDependencies",
    "getStyleMapping",
    "getTableColumnNames",
    "getTableColumns",
    "getTableColumnTypes",
    "getTableValue",
    "getUninstalledApps",
    "getVisualPropertyDefault",
    "getVisualPropertyNames",
    "getVisualStyleJSON",
    "getVisualStyleNames",
    "groupAnnotation",
    "hideAllPanels",
    "hideEdges",
    "hideNodes",
    "hidePanel",
    "hideSelectedEdges",
    "hideSelectedNodes",
    "importFileFromUrl",
    "importFilters",
    "importNetworkFromFile",
    "importNetworkFromNDEx",
    "importVisualStyles",
    "installApp",
    "invertEdgeSelection",
    "invertNodeSelection",
    "layoutCopycat",
    "layoutNetwork",
    "listGroups",
    "loadTableData",
    "lockNodeDimensions",
    "makeSimpleGraph",
    "makeSimpleIgraph",
    "mapTableColumn",
    "mapVisualProperty",
    "matchArrowColorToEdge",
    "mergeNetworks",
    "notebookExportShowImage",
    "notebookShowImage",
    "openAppStore",
    "openSession",
    "paletteColorBrewerAccent",
    "paletteColorBrewerBlues",
    "paletteColorBrewerBrBG",
    "paletteColorBrewerBuGn",
    "paletteColorBrewerBuPu",
    "paletteColorBrewerDark2",
    "paletteColorBrewerGnBu",
    "paletteColorBrewerGreens",
    "paletteColorBrewerGreys",
    "paletteColorBrewerOranges",
    "paletteColorBrewerOrRd",
    "paletteColorBrewerPaired",
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    "paletteColorBrewerPastel2",
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    "paletteColorBrewerPuBuGn",
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    "paletteColorBrewerPuRd",
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    "paletteColorBrewerYlGn",
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    "paletteColorBrewerYlOrBr",
    "paletteColorBrewerYlOrRd",
    "paletteColorRandom",
    "paletteColorVirdis",
    "RemoveFromGroup",
    "removeNodeCustomGraphics",
    "renameNetwork",
    "renameTableColumn",
    "resetDefaultSandbox",
    "rotateLayout",
    "runningRemoteCheck",
    "sandboxGetFileInfo",
    "sandboxGetFrom",
    "sandboxInitializer",
    "sandboxRemove",
    "sandboxRemoveFile",
    "sandboxSendTo",
    "sandboxSet",
    "sandboxUrlTo",
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    "selectAllNodes",
    "selectEdges",
    "selectEdgesAdjacentToNodes",
    "selectEdgesAdjacentToSelectedNodes",
    "selectEdgesConnectingSelectedNodes",
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    "setBackgroundColorDefault",
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    "setCollectionName",
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    "setEdgeTargetArrowShapeMapping",
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    "setEdgeTooltipDefault",
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    "setModelPropagationSecs",
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    "setNetworkPropertyBypass",
    "setNetworkZoomBypass",
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    "setNodeBorderColorDefault",
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    "setNodeBorderOpacityDefault",
    "setNodeBorderOpacityMapping",
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    "setNodeBorderWidthDefault",
    "setNodeBorderWidthMapping",
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    "setNodeColorMapping",
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    "setNodeCustomBarChart",
    "setNodeCustomBoxChart",
    "setNodeCustomHeatMapChart",
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    "setNodeCustomPieChart",
    "setNodeCustomPosition",
    "setNodeCustomRadialGradient",
    "setNodeCustomRingChart",
    "setNodeFillOpacityBypass",
    "setNodeFillOpacityDefault",
    "setNodeFillOpacityMapping",
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    "setNodePositionBypass",
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    "setNodeShapeMapping",
    "setNodeSizeBypass",
    "setNodeSizeDefault",
    "setNodeSizeMapping",
    "setNodeTooltipBypass",
    "setNodeTooltipDefault",
    "setNodeTooltipMapping",
    "setNodeWidthBypass",
    "setNodeWidthDefault",
    "setNodeWidthMapping",
    "setNotebookIsRunning",
    "setSandboxReinitialize",
    "setStyleDependencies",
    "setVisualPropertyDefault",
    "setVisualStyle",
    "spoofResponse",
    "syncNodeCustomGraphicsSize",
    "toggleGraphicsDetails",
    "ungroupAnnotation",
    "unhideAll",
    "unhideEdges",
    "unhideNodes",
    "uninstallApp",
    "UpdateAnnotationBoundedText",
    "updateAnnotationImage",
    "updateAnnotationShape",
    "updateAnnotationText",
    "updateApp",
    "updateGroupAnnotation",
    "updateNetworkInNDEx",
    "updateStyleDefaults",
    "updateStyleMapping"
  ],
  "_help": [
    {
      "page": "dot-exportShowImage",
      "title": ".exportShowImage",
      "topics": [
        ".exportShowImage"
      ]
    },
    {
      "page": "dot-getDefaultSandbox",
      "title": ".getDefaultSandbox",
      "topics": [
        ".getDefaultSandbox"
      ]
    },
    {
      "page": "dot-getRequester",
      "title": ".getRequester",
      "topics": [
        ".getRequester"
      ]
    },
    {
      "page": "addAnnotationBoundedText",
      "title": "Add Bounded Text Annotation",
      "topics": [
        "addAnnotationBoundedText"
      ]
    },
    {
      "page": "addAnnotationImage",
      "title": "Add Image Annotation",
      "topics": [
        "addAnnotationImage"
      ]
    },
    {
      "page": "addAnnotationShape",
      "title": "Add Shape Annotation",
      "topics": [
        "addAnnotationShape"
      ]
    },
    {
      "page": "addAnnotationText",
      "title": "Add Text Annotation",
      "topics": [
        "addAnnotationText"
      ]
    },
    {
      "page": "addCyEdges",
      "title": "Add CyEdges",
      "topics": [
        "addCyEdges"
      ]
    },
    {
      "page": "addCyNodes",
      "title": "Add CyNodes",
      "topics": [
        "addCyNodes"
      ]
    },
    {
      "page": "AddToGroup",
      "title": "Add to Group",
      "topics": [
        "AddToGroup"
      ]
    },
    {
      "page": "analyzeNetwork",
      "title": "Analyze Network",
      "topics": [
        "analyzeNetwork"
      ]
    },
    {
      "page": "applyFilter",
      "title": "Apply Filter",
      "topics": [
        "applyFilter"
      ]
    },
    {
      "page": "bundleEdges",
      "title": "Bundle Edges",
      "topics": [
        "bundleEdges"
      ]
    },
    {
      "page": "checkNotebookIsRunning",
      "title": "checkNotebookIsRunning",
      "topics": [
        "checkNotebookIsRunning"
      ]
    },
    {
      "page": "checkRunningRemote",
      "title": "checkRunningRemote",
      "topics": [
        "checkRunningRemote"
      ]
    },
    {
      "page": "clearEdgeBends",
      "title": "Clear Edge Bends",
      "topics": [
        "clearEdgeBends"
      ]
    },
    {
      "page": "clearEdgePropertyBypass",
      "title": "Clear Edge Property Bypass",
      "topics": [
        "clearEdgePropertyBypass"
      ]
    },
    {
      "page": "clearNetworkCenterBypass",
      "title": "Clear Network Center Bypass",
      "topics": [
        "clearNetworkCenterBypass"
      ]
    },
    {
      "page": "clearNetworkPropertyBypass",
      "title": "Clear Network Property Bypass",
      "topics": [
        "clearNetworkPropertyBypass"
      ]
    },
    {
      "page": "clearNetworkZoomBypass",
      "title": "Clear Network Zoom Bypass",
      "topics": [
        "clearNetworkZoomBypass"
      ]
    },
    {
      "page": "clearNodeOpacityBypass",
      "title": "Clear Node Opacity Bypass",
      "topics": [
        "clearNodeOpacityBypass"
      ]
    },
    {
      "page": "clearNodePropertyBypass",
      "title": "Clear Node Property Bypass",
      "topics": [
        "clearNodePropertyBypass"
      ]
    },
    {
      "page": "clearSelection",
      "title": "Clear Selection",
      "topics": [
        "clearSelection"
      ]
    },
    {
      "page": "cloneNetwork",
      "title": "Clone a Cytoscape Network",
      "topics": [
        "cloneNetwork"
      ]
    },
    {
      "page": "closeSession",
      "title": "Close Session",
      "topics": [
        "closeSession"
      ]
    },
    {
      "page": "collapseGroup",
      "title": "Collapse Group",
      "topics": [
        "collapseGroup"
      ]
    },
    {
      "page": "commandEcho",
      "title": "Command Echo",
      "topics": [
        "commandEcho"
      ]
    },
    {
      "page": "commandOpenDialog",
      "title": "Command Open Dialog",
      "topics": [
        "commandOpenDialog"
      ]
    },
    {
      "page": "commandPause",
      "title": "Command Pause",
      "topics": [
        "commandPause"
      ]
    },
    {
      "page": "commandQuit",
      "title": "Command Quit",
      "topics": [
        "commandQuit"
      ]
    },
    {
      "page": "commandRunFile",
      "title": "Command Run File",
      "topics": [
        "commandRunFile"
      ]
    },
    {
      "page": "commandsAPI",
      "title": "Open Swagger docs for CyREST Commands API",
      "topics": [
        "commandsAPI"
      ]
    },
    {
      "page": "commandsGET",
      "title": "Commands GET",
      "topics": [
        "commandsGET"
      ]
    },
    {
      "page": "commandsHelp",
      "title": "Commands Help",
      "topics": [
        "commandsHelp"
      ]
    },
    {
      "page": "commandSleep",
      "title": "Command Sleep",
      "topics": [
        "commandSleep"
      ]
    },
    {
      "page": "commandsPOST",
      "title": "Commands POST",
      "topics": [
        "commandsPOST"
      ]
    },
    {
      "page": "commandsRun",
      "title": "Run a Command",
      "topics": [
        "commandsRun"
      ]
    },
    {
      "page": "copyVisualStyle",
      "title": "Copy Visual Style",
      "topics": [
        "copyVisualStyle"
      ]
    },
    {
      "page": "createColumnFilter",
      "title": "Create Column Filter",
      "topics": [
        "createColumnFilter"
      ]
    },
    {
      "page": "createCompositeFilter",
      "title": "Create Composite Filter",
      "topics": [
        "createCompositeFilter"
      ]
    },
    {
      "page": "createCytoscapejsFromNetwork",
      "title": "Create Cytoscapejs from Network",
      "topics": [
        "createCytoscapejsFromNetwork"
      ]
    },
    {
      "page": "createDegreeFilter",
      "title": "Create Degree Filter",
      "topics": [
        "createDegreeFilter"
      ]
    },
    {
      "page": "createGraphFromNetwork",
      "title": "createGraphFromNetwork",
      "topics": [
        "createGraphFromNetwork"
      ]
    },
    {
      "page": "createGroup",
      "title": "Create Group",
      "topics": [
        "createGroup"
      ]
    },
    {
      "page": "createGroupByColumn",
      "title": "Create Group by Column",
      "topics": [
        "createGroupByColumn"
      ]
    },
    {
      "page": "createIgraphFromNetwork",
      "title": "Create an igraph network from a Cytoscape network",
      "topics": [
        "createIgraphFromNetwork"
      ]
    },
    {
      "page": "createNetworkFromCytoscapejs",
      "title": "Create a Network from Cytoscapejs",
      "topics": [
        "createNetworkFromCytoscapejs"
      ]
    },
    {
      "page": "createNetworkFromDataFrames",
      "title": "Create a network from data frames",
      "topics": [
        "createNetworkFromDataFrames"
      ]
    },
    {
      "page": "createNetworkFromGraph",
      "title": "Create Network From Graph",
      "topics": [
        "createNetworkFromGraph"
      ]
    },
    {
      "page": "createNetworkFromIgraph",
      "title": "Create a Cytoscape network from an igraph network",
      "topics": [
        "createNetworkFromIgraph"
      ]
    },
    {
      "page": "createSubnetwork",
      "title": "Create subnetwork from existing network",
      "topics": [
        "createSubnetwork"
      ]
    },
    {
      "page": "createView",
      "title": "Create Network View",
      "topics": [
        "createView"
      ]
    },
    {
      "page": "createVisualStyle",
      "title": "Create a visual style from components",
      "topics": [
        "createVisualStyle"
      ]
    },
    {
      "page": "cybrowserClose",
      "title": "Cybrowser Close",
      "topics": [
        "cybrowserClose"
      ]
    },
    {
      "page": "cybrowserDialog",
      "title": "Cybrowser Dialog",
      "topics": [
        "cybrowserDialog"
      ]
    },
    {
      "page": "cybrowserHide",
      "title": "Cybrowser Hide",
      "topics": [
        "cybrowserHide"
      ]
    },
    {
      "page": "cybrowserList",
      "title": "Cybrowser List",
      "topics": [
        "cybrowserList"
      ]
    },
    {
      "page": "cybrowserSend",
      "title": "Cybrowser Send",
      "topics": [
        "cybrowserSend"
      ]
    },
    {
      "page": "cybrowserShow",
      "title": "Cybrowser Show",
      "topics": [
        "cybrowserShow"
      ]
    },
    {
      "page": "cybrowserVersion",
      "title": "Cybrowser Version",
      "topics": [
        "cybrowserVersion"
      ]
    },
    {
      "page": "cyrestAPI",
      "title": "Open Swagger docs for CyREST API",
      "topics": [
        "cyrestAPI"
      ]
    },
    {
      "page": "cyrestDELETE",
      "title": "CyREST DELETE",
      "topics": [
        "cyrestDELETE"
      ]
    },
    {
      "page": "cyrestGET",
      "title": "CyREST GET",
      "topics": [
        "cyrestGET"
      ]
    },
    {
      "page": "cyrestPOST",
      "title": "CyREST POST",
      "topics": [
        "cyrestPOST"
      ]
    },
    {
      "page": "cyrestPUT",
      "title": "CyREST PUT",
      "topics": [
        "cyrestPUT"
      ]
    },
    {
      "page": "cytoscapeApiVersions",
      "title": "Available CyREST API Versions",
      "topics": [
        "cytoscapeApiVersions"
      ]
    },
    {
      "page": "cytoscapeFreeMemory",
      "title": "Free Up Unused Memory for Cytoscape",
      "topics": [
        "cytoscapeFreeMemory"
      ]
    },
    {
      "page": "cytoscapeMemoryStatus",
      "title": "Memory Available to Cytoscape",
      "topics": [
        "cytoscapeMemoryStatus"
      ]
    },
    {
      "page": "cytoscapeNumberOfCores",
      "title": "Number of Processors Available to Cytoscape",
      "topics": [
        "cytoscapeNumberOfCores"
      ]
    },
    {
      "page": "cytoscapePing",
      "title": "Ping Cytoscape",
      "topics": [
        "cytoscapePing"
      ]
    },
    {
      "page": "cytoscapeVersionInfo",
      "title": "Cytoscape and CyREST API Versions",
      "topics": [
        "cytoscapeVersionInfo"
      ]
    },
    {
      "page": "deleteAllNetworks",
      "title": "Delete All Networks",
      "topics": [
        "deleteAllNetworks"
      ]
    },
    {
      "page": "deleteAllVisualStyle",
      "title": "Delete All Visual Style",
      "topics": [
        "deleteAllVisualStyle"
      ]
    },
    {
      "page": "deleteAnnotation",
      "title": "Delete Annotation",
      "topics": [
        "deleteAnnotation"
      ]
    },
    {
      "page": "deleteDuplicateEdges",
      "title": "Delete Duplicate Edges",
      "topics": [
        "deleteDuplicateEdges"
      ]
    },
    {
      "page": "deleteGroup",
      "title": "Delete (or Ungroup) a Group",
      "topics": [
        "deleteGroup"
      ]
    },
    {
      "page": "deleteNetwork",
      "title": "Delete Network",
      "topics": [
        "deleteNetwork"
      ]
    },
    {
      "page": "deleteSelectedEdges",
      "title": "Delete Selected Edges",
      "topics": [
        "deleteSelectedEdges"
      ]
    },
    {
      "page": "deleteSelectedNodes",
      "title": "Delete Selected Nodes",
      "topics": [
        "deleteSelectedNodes"
      ]
    },
    {
      "page": "deleteSelfLoops",
      "title": "Delete Self Loops",
      "topics": [
        "deleteSelfLoops"
      ]
    },
    {
      "page": "deleteStyleMapping",
      "title": "Delete Style Mapping",
      "topics": [
        "deleteStyleMapping"
      ]
    },
    {
      "page": "deleteTableColumn",
      "title": "Delete a table column",
      "topics": [
        "deleteTableColumn"
      ]
    },
    {
      "page": "deleteVisualStyle",
      "title": "Delete Visual Style",
      "topics": [
        "deleteVisualStyle"
      ]
    },
    {
      "page": "diffusionAdvanced",
      "title": "Diffusion Advanced",
      "topics": [
        "diffusionAdvanced"
      ]
    },
    {
      "page": "diffusionBasic",
      "title": "Diffusion Basic",
      "topics": [
        "diffusionBasic"
      ]
    },
    {
      "page": "disableApp",
      "title": "Disable App",
      "topics": [
        "disableApp"
      ]
    },
    {
      "page": "dockPanel",
      "title": "Dock Panel",
      "topics": [
        "dockPanel"
      ]
    },
    {
      "page": "doInitializeSandbox",
      "title": "doInitializeSandbox",
      "topics": [
        "doInitializeSandbox"
      ]
    },
    {
      "page": "doRequestRemote",
      "title": "doRequestRemote",
      "topics": [
        "doRequestRemote"
      ]
    },
    {
      "page": "doSetSandbox",
      "title": "doSetSandbox",
      "topics": [
        "doSetSandbox"
      ]
    },
    {
      "page": "enableApp",
      "title": "Enable App",
      "topics": [
        "enableApp"
      ]
    },
    {
      "page": "expandGroup",
      "title": "Expand Group",
      "topics": [
        "expandGroup"
      ]
    },
    {
      "page": "exportFilters",
      "title": "Export Filters",
      "topics": [
        "exportFilters"
      ]
    },
    {
      "page": "exportImage",
      "title": "Export Image",
      "topics": [
        "exportImage"
      ]
    },
    {
      "page": "exportJPG",
      "title": "Export JPG",
      "topics": [
        "exportJPG"
      ]
    },
    {
      "page": "exportNetwork",
      "title": "Export Network",
      "topics": [
        "exportNetwork"
      ]
    },
    {
      "page": "exportNetworkToNDEx",
      "title": "Export Network To NDEx",
      "topics": [
        "exportNetworkToNDEx"
      ]
    },
    {
      "page": "exportPDF",
      "title": "Export PDF",
      "topics": [
        "exportPDF"
      ]
    },
    {
      "page": "exportPNG",
      "title": "Export PNG",
      "topics": [
        "exportPNG"
      ]
    },
    {
      "page": "exportPS",
      "title": "Export PS",
      "topics": [
        "exportPS"
      ]
    },
    {
      "page": "exportSVG",
      "title": "Export SVG",
      "topics": [
        "exportSVG"
      ]
    },
    {
      "page": "exportVisualStyles",
      "title": "Export Visual Styles",
      "topics": [
        "exportVisualStyles"
      ]
    },
    {
      "page": "findRemoteCytoscape",
      "title": "findRemoteCytoscape",
      "topics": [
        "findRemoteCytoscape"
      ]
    },
    {
      "page": "fitContent",
      "title": "Fit Content",
      "topics": [
        "fitContent"
      ]
    },
    {
      "page": "floatPanel",
      "title": "Float Panel",
      "topics": [
        "floatPanel"
      ]
    },
    {
      "page": "getAbsSandboxPath",
      "title": "getAbsSandboxPath",
      "topics": [
        "getAbsSandboxPath"
      ]
    },
    {
      "page": "getAllEdges",
      "title": "Get All Edges",
      "topics": [
        "getAllEdges"
      ]
    },
    {
      "page": "getAllNodes",
      "title": "Get All Nodes",
      "topics": [
        "getAllNodes"
      ]
    },
    {
      "page": "getAllStyleMappings",
      "title": "Get All Style Mappings",
      "topics": [
        "getAllStyleMappings"
      ]
    },
    {
      "page": "getAnnotationList",
      "title": "Get Annotation List",
      "topics": [
        "getAnnotationList"
      ]
    },
    {
      "page": "getAppInformation",
      "title": "Get App Information",
      "topics": [
        "getAppInformation"
      ]
    },
    {
      "page": "getAppStatus",
      "title": "App Status",
      "topics": [
        "getAppStatus"
      ]
    },
    {
      "page": "getAppUpdates",
      "title": "List Apps With Updates",
      "topics": [
        "getAppUpdates"
      ]
    },
    {
      "page": "getArrowShapes",
      "title": "Get Arrow Shapes",
      "topics": [
        "getArrowShapes"
      ]
    },
    {
      "page": "getAvailableApps",
      "title": "List Available Apps",
      "topics": [
        "getAvailableApps"
      ]
    },
    {
      "page": "getBackgroundColorDefault",
      "title": "Get Background Color Default",
      "topics": [
        "getBackgroundColorDefault"
      ]
    },
    {
      "page": "getBrowserClientChannel",
      "title": "getBrowserClientChannel",
      "topics": [
        "getBrowserClientChannel"
      ]
    },
    {
      "page": "getBrowserClientJs",
      "title": "getBrowserClientJs",
      "topics": [
        "getBrowserClientJs"
      ]
    },
    {
      "page": "getCollectionList",
      "title": "Get Collection List",
      "topics": [
        "getCollectionList"
      ]
    },
    {
      "page": "getCollectionName",
      "title": "Get Collection Name",
      "topics": [
        "getCollectionName"
      ]
    },
    {
      "page": "getCollectionNetworks",
      "title": "Get Collection Networks",
      "topics": [
        "getCollectionNetworks"
      ]
    },
    {
      "page": "getCollectionSuid",
      "title": "Get Collection Suid",
      "topics": [
        "getCollectionSuid"
      ]
    },
    {
      "page": "getCurrentSandbox",
      "title": "getCurrentSandbox",
      "topics": [
        "getCurrentSandbox"
      ]
    },
    {
      "page": "getCurrentSandboxName",
      "title": "getCurrentSandboxName",
      "topics": [
        "getCurrentSandboxName"
      ]
    },
    {
      "page": "getCurrentSandboxPath",
      "title": "getCurrentSandboxPath",
      "topics": [
        "getCurrentSandboxPath"
      ]
    },
    {
      "page": "getCurrentStyle",
      "title": "Get Current Style",
      "topics": [
        "getCurrentStyle"
      ]
    },
    {
      "page": "getDefaultSandbox",
      "title": "getDefaultSandbox",
      "topics": [
        "getDefaultSandbox"
      ]
    },
    {
      "page": "getDefaultSandboxPath",
      "title": "getDefaultSandboxPath",
      "topics": [
        "getDefaultSandboxPath"
      ]
    },
    {
      "page": "getDisabledApps",
      "title": "List Disabled Apps",
      "topics": [
        "getDisabledApps"
      ]
    },
    {
      "page": "getEdgeColor",
      "title": "Get Edge Color",
      "topics": [
        "getEdgeColor"
      ]
    },
    {
      "page": "getEdgeCount",
      "title": "Get Edge Count",
      "topics": [
        "getEdgeCount"
      ]
    },
    {
      "page": "getEdgeInfo",
      "title": "Get Edge Information",
      "topics": [
        "getEdgeInfo"
      ]
    },
    {
      "page": "getEdgeLineStyle",
      "title": "Get Edge Line Style",
      "topics": [
        "getEdgeLineStyle"
      ]
    },
    {
      "page": "getEdgeLineWidth",
      "title": "Get Edge Line Width",
      "topics": [
        "getEdgeLineWidth"
      ]
    },
    {
      "page": "getEdgeProperty",
      "title": "Get Edge Property Values",
      "topics": [
        "getEdgeProperty"
      ]
    },
    {
      "page": "getEdgeSelectionColorDefault",
      "title": "Get Edge Selection Color Default",
      "topics": [
        "getEdgeSelectionColorDefault"
      ]
    },
    {
      "page": "getEdgeTargetArrowShape",
      "title": "Get Edge Target Arrow Shape",
      "topics": [
        "getEdgeTargetArrowShape"
      ]
    },
    {
      "page": "getFilterList",
      "title": "Get Filter List",
      "topics": [
        "getFilterList"
      ]
    },
    {
      "page": "getFirstNeighbors",
      "title": "Get list of nodes neighboring provided list",
      "topics": [
        "getFirstNeighbors"
      ]
    },
    {
      "page": "getGroupInfo",
      "title": "Get Group Information",
      "topics": [
        "getGroupInfo"
      ]
    },
    {
      "page": "getInstalledApps",
      "title": "List Installed Apps",
      "topics": [
        "getInstalledApps"
      ]
    },
    {
      "page": "getJupyterBridgeURL",
      "title": "getJupyterBridgeURL",
      "topics": [
        "getJupyterBridgeURL"
      ]
    },
    {
      "page": "getLayoutNameMapping",
      "title": "Get Layout Name Mapping",
      "topics": [
        "getLayoutNameMapping"
      ]
    },
    {
      "page": "getLayoutNames",
      "title": "Get Layout Names",
      "topics": [
        "getLayoutNames"
      ]
    },
    {
      "page": "getLayoutPropertyNames",
      "title": "Get Layout Property Names",
      "topics": [
        "getLayoutPropertyNames"
      ]
    },
    {
      "page": "getLayoutPropertyType",
      "title": "Get Layout Property Type",
      "topics": [
        "getLayoutPropertyType"
      ]
    },
    {
      "page": "getLayoutPropertyValue",
      "title": "Get Layout Property Value",
      "topics": [
        "getLayoutPropertyValue"
      ]
    },
    {
      "page": "getLineStyles",
      "title": "Get Line Styles",
      "topics": [
        "getLineStyles"
      ]
    },
    {
      "page": "getNetworkCenter",
      "title": "Get Network Center",
      "topics": [
        "getNetworkCenter"
      ]
    },
    {
      "page": "getNetworkCount",
      "title": "Get the number of Cytoscape networks",
      "topics": [
        "getNetworkCount"
      ]
    },
    {
      "page": "getNetworkList",
      "title": "Get the list of Cytoscape networks",
      "topics": [
        "getNetworkList"
      ]
    },
    {
      "page": "getNetworkName",
      "title": "Get the name of a network",
      "topics": [
        "getNetworkName"
      ]
    },
    {
      "page": "getNetworkNDExId",
      "title": "Get Network NDEx Id",
      "topics": [
        "getNetworkNDExId"
      ]
    },
    {
      "page": "getNetworkProperty",
      "title": "Get Network Property Values",
      "topics": [
        "getNetworkProperty"
      ]
    },
    {
      "page": "getNetworkSuid",
      "title": "Get the SUID of a network",
      "topics": [
        "getNetworkSuid"
      ]
    },
    {
      "page": "getNetworkViews",
      "title": "Get Network Views",
      "topics": [
        "getNetworkViews"
      ]
    },
    {
      "page": "getNetworkViewSuid",
      "title": "Get the SUID of a network view",
      "topics": [
        "getNetworkViewSuid"
      ]
    },
    {
      "page": "getNetworkZoom",
      "title": "Get Network Zoom",
      "topics": [
        "getNetworkZoom"
      ]
    },
    {
      "page": "getNodeColor",
      "title": "Get Node Color",
      "topics": [
        "getNodeColor"
      ]
    },
    {
      "page": "getNodeCount",
      "title": "Get Node Count",
      "topics": [
        "getNodeCount"
      ]
    },
    {
      "page": "getNodeHeight",
      "title": "Get Node Height",
      "topics": [
        "getNodeHeight"
      ]
    },
    {
      "page": "getNodeLabelPosition",
      "title": "Get Node Label Position",
      "topics": [
        "getNodeLabelPosition"
      ]
    },
    {
      "page": "getNodeLabelPositionDefault",
      "title": "Get Node Label Position Default",
      "topics": [
        "getNodeLabelPositionDefault"
      ]
    },
    {
      "page": "getNodePosition",
      "title": "Get Node Position",
      "topics": [
        "getNodePosition"
      ]
    },
    {
      "page": "getNodeProperty",
      "title": "Get Node Property Values",
      "topics": [
        "getNodeProperty"
      ]
    },
    {
      "page": "getNodeSelectionColorDefault",
      "title": "Get Node Selection Color Default",
      "topics": [
        "getNodeSelectionColorDefault"
      ]
    },
    {
      "page": "getNodeShapes",
      "title": "Get Node Shapes",
      "topics": [
        "getNodeShapes"
      ]
    },
    {
      "page": "getNodeSize",
      "title": "Get Node Size",
      "topics": [
        "getNodeSize"
      ]
    },
    {
      "page": "getNodeWidth",
      "title": "Get Node Width",
      "topics": [
        "getNodeWidth"
      ]
    },
    {
      "page": "getNotebookIsRunning",
      "title": "getNotebookIsRunning",
      "topics": [
        "getNotebookIsRunning"
      ]
    },
    {
      "page": "getSandboxReinitialize",
      "title": "getSandboxReinitialize",
      "topics": [
        "getSandboxReinitialize"
      ]
    },
    {
      "page": "getSelectedEdgeCount",
      "title": "Get Selected Edge Count",
      "topics": [
        "getSelectedEdgeCount"
      ]
    },
    {
      "page": "getSelectedEdges",
      "title": "Get Selected Edges",
      "topics": [
        "getSelectedEdges"
      ]
    },
    {
      "page": "getSelectedNodeCount",
      "title": "Get Selected Node Count",
      "topics": [
        "getSelectedNodeCount"
      ]
    },
    {
      "page": "getSelectedNodes",
      "title": "Get Selected Nodes",
      "topics": [
        "getSelectedNodes"
      ]
    },
    {
      "page": "getStyleDependencies",
      "title": "Get the values of dependencies in a style",
      "topics": [
        "getStyleDependencies"
      ]
    },
    {
      "page": "getStyleMapping",
      "title": "Get Style Mapping",
      "topics": [
        "getStyleMapping"
      ]
    },
    {
      "page": "getTableColumnNames",
      "title": "Get Table Column Names",
      "topics": [
        "getTableColumnNames"
      ]
    },
    {
      "page": "getTableColumns",
      "title": "Get table column values",
      "topics": [
        "getTableColumns"
      ]
    },
    {
      "page": "getTableColumnTypes",
      "title": "Get Table Column Types",
      "topics": [
        "getTableColumnTypes"
      ]
    },
    {
      "page": "getTableValue",
      "title": "Get table cell value",
      "topics": [
        "getTableValue"
      ]
    },
    {
      "page": "getUninstalledApps",
      "title": "List Uninstalled Apps",
      "topics": [
        "getUninstalledApps"
      ]
    },
    {
      "page": "getVisualPropertyDefault",
      "title": "Get Visual Property Default",
      "topics": [
        "getVisualPropertyDefault"
      ]
    },
    {
      "page": "getVisualPropertyNames",
      "title": "Get Visual Property Names",
      "topics": [
        "getVisualPropertyNames"
      ]
    },
    {
      "page": "getVisualStyleJSON",
      "title": "Get Visual Style JSON",
      "topics": [
        "getVisualStyleJSON"
      ]
    },
    {
      "page": "getVisualStyleNames",
      "title": "Get Visual Style Names",
      "topics": [
        "getVisualStyleNames"
      ]
    },
    {
      "page": "groupAnnotation",
      "title": "Group Annotation",
      "topics": [
        "groupAnnotation"
      ]
    },
    {
      "page": "hideAllPanels",
      "title": "Hide All Panels",
      "topics": [
        "hideAllPanels"
      ]
    },
    {
      "page": "hideEdges",
      "title": "Hide Edges",
      "topics": [
        "hideEdges"
      ]
    },
    {
      "page": "hideNodes",
      "title": "Hide Nodes",
      "topics": [
        "hideNodes"
      ]
    },
    {
      "page": "hidePanel",
      "title": "Hide Panel",
      "topics": [
        "hidePanel"
      ]
    },
    {
      "page": "hideSelectedEdges",
      "title": "Hide Selected Edges",
      "topics": [
        "hideSelectedEdges"
      ]
    },
    {
      "page": "hideSelectedNodes",
      "title": "Hide Selected Nodes",
      "topics": [
        "hideSelectedNodes"
      ]
    },
    {
      "page": "importFileFromUrl",
      "title": "importFileFromUrl",
      "topics": [
        "importFileFromUrl"
      ]
    },
    {
      "page": "importFilters",
      "title": "Import Filters",
      "topics": [
        "importFilters"
      ]
    },
    {
      "page": "importNetworkFromFile",
      "title": "Import Network From File",
      "topics": [
        "importNetworkFromFile"
      ]
    },
    {
      "page": "importNetworkFromNDEx",
      "title": "Import Network From NDEx",
      "topics": [
        "importNetworkFromNDEx"
      ]
    },
    {
      "page": "importVisualStyles",
      "title": "Import Visual Styles",
      "topics": [
        "importVisualStyles"
      ]
    },
    {
      "page": "installApp",
      "title": "Install App",
      "topics": [
        "installApp"
      ]
    },
    {
      "page": "invertEdgeSelection",
      "title": "Invert Edge Selection",
      "topics": [
        "invertEdgeSelection"
      ]
    },
    {
      "page": "invertNodeSelection",
      "title": "Invert Node Selection",
      "topics": [
        "invertNodeSelection"
      ]
    },
    {
      "page": "layoutCopycat",
      "title": "Copy a layout from one network to another",
      "topics": [
        "layoutCopycat"
      ]
    },
    {
      "page": "layoutNetwork",
      "title": "Apply a layout to a network",
      "topics": [
        "layoutNetwork"
      ]
    },
    {
      "page": "listGroups",
      "title": "List Groups",
      "topics": [
        "listGroups"
      ]
    },
    {
      "page": "loadTableData",
      "title": "Loads data into Cytoscape tables keyed by row",
      "topics": [
        "loadTableData"
      ]
    },
    {
      "page": "lockNodeDimensions",
      "title": "Lock Node Dimensions",
      "topics": [
        "lockNodeDimensions"
      ]
    },
    {
      "page": "makeSimpleGraph",
      "title": "Make Simple Graph",
      "topics": [
        "makeSimpleGraph"
      ]
    },
    {
      "page": "makeSimpleIgraph",
      "title": "Make Simple Igraph",
      "topics": [
        "makeSimpleIgraph"
      ]
    },
    {
      "page": "mapTableColumn",
      "title": "Map Table Column",
      "topics": [
        "mapTableColumn"
      ]
    },
    {
      "page": "mapVisualProperty",
      "title": "Creates a mapping between an attribute and a visual property",
      "topics": [
        "mapVisualProperty"
      ]
    },
    {
      "page": "matchArrowColorToEdge",
      "title": "Match Arrow Color To Edge",
      "topics": [
        "matchArrowColorToEdge"
      ]
    },
    {
      "page": "mergeNetworks",
      "title": "Merge Networks",
      "topics": [
        "mergeNetworks"
      ]
    },
    {
      "page": "notebookExportShowImage",
      "title": "notebookExportShowImage",
      "topics": [
        "notebookExportShowImage"
      ]
    },
    {
      "page": "notebookShowImage",
      "title": "notebookShowImage",
      "topics": [
        "notebookShowImage"
      ]
    },
    {
      "page": "openAppStore",
      "title": "Open App Store Page",
      "topics": [
        "openAppStore"
      ]
    },
    {
      "page": "openSession",
      "title": "Open Session File or URL",
      "topics": [
        "openSession"
      ]
    },
    {
      "page": "paletteColorBrewerAccent",
      "title": "paletteColorBrewerAccent Qualitative",
      "topics": [
        "paletteColorBrewerAccent"
      ]
    },
    {
      "page": "paletteColorBrewerBlues",
      "title": "paletteColorBrewerBlues Sequential",
      "topics": [
        "paletteColorBrewerBlues"
      ]
    },
    {
      "page": "paletteColorBrewerBrBG",
      "title": "paletteColorBrewerBrBG Divergent",
      "topics": [
        "paletteColorBrewerBrBG"
      ]
    },
    {
      "page": "paletteColorBrewerBuGn",
      "title": "paletteColorBrewerBuGn Sequential",
      "topics": [
        "paletteColorBrewerBuGn"
      ]
    },
    {
      "page": "paletteColorBrewerBuPu",
      "title": "paletteColorBrewerBuPu Sequential",
      "topics": [
        "paletteColorBrewerBuPu"
      ]
    },
    {
      "page": "paletteColorBrewerDark2",
      "title": "paletteColorBrewerDark2 Qualitative",
      "topics": [
        "paletteColorBrewerDark2"
      ]
    },
    {
      "page": "paletteColorBrewerGnBu",
      "title": "paletteColorBrewerGnBu Sequential",
      "topics": [
        "paletteColorBrewerGnBu"
      ]
    },
    {
      "page": "paletteColorBrewerGreens",
      "title": "paletteColorBrewerGreens Sequential",
      "topics": [
        "paletteColorBrewerGreens"
      ]
    },
    {
      "page": "paletteColorBrewerGreys",
      "title": "paletteColorBrewerGreys Sequential",
      "topics": [
        "paletteColorBrewerGreys"
      ]
    },
    {
      "page": "paletteColorBrewerOranges",
      "title": "paletteColorBrewerOranges Sequential",
      "topics": [
        "paletteColorBrewerOranges"
      ]
    },
    {
      "page": "paletteColorBrewerOrRd",
      "title": "paletteColorBrewerOrRd Sequential",
      "topics": [
        "paletteColorBrewerOrRd"
      ]
    },
    {
      "page": "paletteColorBrewerPaired",
      "title": "paletteColorBrewerPaired Qualitative",
      "topics": [
        "paletteColorBrewerPaired"
      ]
    },
    {
      "page": "paletteColorBrewerPastel1",
      "title": "paletteColorBrewerPastel1 Qualitative",
      "topics": [
        "paletteColorBrewerPastel1"
      ]
    },
    {
      "page": "paletteColorBrewerPastel2",
      "title": "paletteColorBrewerPastel2 Qualitative",
      "topics": [
        "paletteColorBrewerPastel2"
      ]
    },
    {
      "page": "paletteColorBrewerPiYG",
      "title": "paletteColorBrewerPiYG Divergent",
      "topics": [
        "paletteColorBrewerPiYG"
      ]
    },
    {
      "page": "paletteColorBrewerPRGn",
      "title": "paletteColorBrewerPRGn Divergent",
      "topics": [
        "paletteColorBrewerPRGn"
      ]
    },
    {
      "page": "paletteColorBrewerPuBu",
      "title": "paletteColorBrewerPuBu Sequential",
      "topics": [
        "paletteColorBrewerPuBu"
      ]
    },
    {
      "page": "paletteColorBrewerPuBuGn",
      "title": "paletteColorBrewerPuBuGn Sequential",
      "topics": [
        "paletteColorBrewerPuBuGn"
      ]
    },
    {
      "page": "paletteColorBrewerPuOr",
      "title": "paletteColorBrewerPuOr Divergent",
      "topics": [
        "paletteColorBrewerPuOr"
      ]
    },
    {
      "page": "paletteColorBrewerPuRd",
      "title": "paletteColorBrewerPuRd Sequential",
      "topics": [
        "paletteColorBrewerPuRd"
      ]
    },
    {
      "page": "paletteColorBrewerPurples",
      "title": "paletteColorBrewerPurples Sequential",
      "topics": [
        "paletteColorBrewerPurples"
      ]
    },
    {
      "page": "paletteColorBrewerRdBu",
      "title": "paletteColorBrewerRdBu Divergent",
      "topics": [
        "paletteColorBrewerRdBu"
      ]
    },
    {
      "page": "paletteColorBrewerRdPu",
      "title": "paletteColorBrewerRdPu Sequential",
      "topics": [
        "paletteColorBrewerRdPu"
      ]
    },
    {
      "page": "paletteColorBrewerRdYlBu",
      "title": "paletteColorBrewerRdYlBu Divergent",
      "topics": [
        "paletteColorBrewerRdYlBu"
      ]
    },
    {
      "page": "paletteColorBrewerReds",
      "title": "paletteColorBrewerReds Sequential",
      "topics": [
        "paletteColorBrewerReds"
      ]
    },
    {
      "page": "paletteColorBrewerSet1",
      "title": "paletteColorBrewerSet1 Qualitative",
      "topics": [
        "paletteColorBrewerSet1"
      ]
    },
    {
      "page": "paletteColorBrewerSet2",
      "title": "paletteColorBrewerSet2 Qualitative",
      "topics": [
        "paletteColorBrewerSet2"
      ]
    },
    {
      "page": "paletteColorBrewerSet3",
      "title": "paletteColorBrewerSet3 Qualitative",
      "topics": [
        "paletteColorBrewerSet3"
      ]
    },
    {
      "page": "paletteColorBrewerYlGn",
      "title": "paletteColorBrewerYlGn Sequential",
      "topics": [
        "paletteColorBrewerYlGn"
      ]
    },
    {
      "page": "paletteColorBrewerYlGnBu",
      "title": "paletteColorBrewerYlGnBu Sequential",
      "topics": [
        "paletteColorBrewerYlGnBu"
      ]
    },
    {
      "page": "paletteColorBrewerYlOrBr",
      "title": "paletteColorBrewerYlOrBr Sequential",
      "topics": [
        "paletteColorBrewerYlOrBr"
      ]
    },
    {
      "page": "paletteColorBrewerYlOrRd",
      "title": "paletteColorBrewerYlOrRd Sequential",
      "topics": [
        "paletteColorBrewerYlOrRd"
      ]
    },
    {
      "page": "paletteColorRandom",
      "title": "paletteColorRandom Qualitative",
      "topics": [
        "paletteColorRandom"
      ]
    },
    {
      "page": "paletteColorVirdis",
      "title": "paletteColorVirdis",
      "topics": [
        "paletteColorVirdis"
      ]
    },
    {
      "page": "RCy3",
      "title": "RCy3: Functions to Access and Control Cytoscape",
      "topics": [
        "RCy3-package",
        "RCy3"
      ]
    },
    {
      "page": "RemoveFromGroup",
      "title": "Remove from Group",
      "topics": [
        "RemoveFromGroup"
      ]
    },
    {
      "page": "removeNodeCustomGraphics",
      "title": "Remove Node Custom Graphics",
      "topics": [
        "removeNodeCustomGraphics"
      ]
    },
    {
      "page": "renameNetwork",
      "title": "Rename a network",
      "topics": [
        "renameNetwork"
      ]
    },
    {
      "page": "renameTableColumn",
      "title": "Rename Table Column",
      "topics": [
        "renameTableColumn"
      ]
    },
    {
      "page": "resetDefaultSandbox",
      "title": "resetDefaultSandbox",
      "topics": [
        "resetDefaultSandbox"
      ]
    },
    {
      "page": "rotateLayout",
      "title": "Rotate Layout",
      "topics": [
        "rotateLayout"
      ]
    },
    {
      "page": "runningRemoteCheck",
      "title": "runningRmoteCheck",
      "topics": [
        "runningRemoteCheck"
      ]
    },
    {
      "page": "sandboxGetFileInfo",
      "title": "sandboxGetFileInfo",
      "topics": [
        "sandboxGetFileInfo"
      ]
    },
    {
      "page": "sandboxGetFrom",
      "title": "sandboxGetFrom",
      "topics": [
        "sandboxGetFrom"
      ]
    },
    {
      "page": "sandboxInitializer",
      "title": "sandboxInitializer",
      "topics": [
        "sandboxInitializer"
      ]
    },
    {
      "page": "sandboxRemove",
      "title": "sandboxRemove",
      "topics": [
        "sandboxRemove"
      ]
    },
    {
      "page": "sandboxRemoveFile",
      "title": "sandboxRemoveFile",
      "topics": [
        "sandboxRemoveFile"
      ]
    },
    {
      "page": "sandboxSendTo",
      "title": "sandboxSendTo",
      "topics": [
        "sandboxSendTo"
      ]
    },
    {
      "page": "sandboxSet",
      "title": "sandboxSet",
      "topics": [
        "sandboxSet"
      ]
    },
    {
      "page": "sandboxUrlTo",
      "title": "sandboxUrlTo",
      "topics": [
        "sandboxUrlTo"
      ]
    },
    {
      "page": "saveSession",
      "title": "Save Session to File",
      "topics": [
        "saveSession"
      ]
    },
    {
      "page": "scaleLayout",
      "title": "Scale Layout",
      "topics": [
        "scaleLayout"
      ]
    },
    {
      "page": "selectAll",
      "title": "Select all nodes and edges",
      "topics": [
        "selectAll"
      ]
    },
    {
      "page": "selectAllEdges",
      "title": "Select all edges",
      "topics": [
        "selectAllEdges"
      ]
    },
    {
      "page": "selectAllNodes",
      "title": "Select all nodes",
      "topics": [
        "selectAllNodes"
      ]
    },
    {
      "page": "selectEdges",
      "title": "Select Edges",
      "topics": [
        "selectEdges"
      ]
    },
    {
      "page": "selectEdgesAdjacentToNodes",
      "title": "Select Edges Adjacent To Nodes",
      "topics": [
        "selectEdgesAdjacentToNodes"
      ]
    },
    {
      "page": "selectEdgesAdjacentToSelectedNodes",
      "title": "Select Edges Adjacent To Selected Nodes",
      "topics": [
        "selectEdgesAdjacentToSelectedNodes"
      ]
    },
    {
      "page": "selectEdgesConnectingSelectedNodes",
      "title": "Select the edges connecting selected nodes in Cytoscape Network",
      "topics": [
        "selectEdgesConnectingSelectedNodes"
      ]
    },
    {
      "page": "selectFirstNeighbors",
      "title": "Select first neighbor nodes",
      "topics": [
        "selectFirstNeighbors"
      ]
    },
    {
      "page": "selectNodes",
      "title": "Select Nodes",
      "topics": [
        "selectNodes"
      ]
    },
    {
      "page": "selectNodesConnectedBySelectedEdges",
      "title": "Select Nodes Connected By Selected Edges",
      "topics": [
        "selectNodesConnectedBySelectedEdges"
      ]
    },
    {
      "page": "setBackgroundColorDefault",
      "title": "Set Background Color Default",
      "topics": [
        "setBackgroundColorDefault"
      ]
    },
    {
      "page": "setCatchupFilterSecs",
      "title": "Set Catchup Filter Delay",
      "topics": [
        "setCatchupFilterSecs"
      ]
    },
    {
      "page": "setCatchupNetworkSecs",
      "title": "Set Catchup Network Delay",
      "topics": [
        "setCatchupNetworkSecs"
      ]
    },
    {
      "page": "setCollectionName",
      "title": "Set Collection Name",
      "topics": [
        "setCollectionName"
      ]
    },
    {
      "page": "setCurrentNetwork",
      "title": "Set current network",
      "topics": [
        "setCurrentNetwork"
      ]
    },
    {
      "page": "setCurrentSandbox",
      "title": "setCurrentSandbox",
      "topics": [
        "setCurrentSandbox"
      ]
    },
    {
      "page": "setCurrentView",
      "title": "Set Current View",
      "topics": [
        "setCurrentView"
      ]
    },
    {
      "page": "setDefaultSandbox",
      "title": "setDefaultSandbox",
      "topics": [
        "setDefaultSandbox"
      ]
    },
    {
      "page": "setDefaultSandboxPath",
      "title": "setDefaultSandboxPath",
      "topics": [
        "setDefaultSandboxPath"
      ]
    },
    {
      "page": "setEdgeColorBypass",
      "title": "Set Edge Color Bypass",
      "topics": [
        "setEdgeColorBypass"
      ]
    },
    {
      "page": "setEdgeColorDefault",
      "title": "Set Edge Color Default",
      "topics": [
        "setEdgeColorDefault"
      ]
    },
    {
      "page": "setEdgeColorMapping",
      "title": "Set Edge Color Mapping",
      "topics": [
        "setEdgeColorMapping"
      ]
    },
    {
      "page": "setEdgeFontFaceBypass",
      "title": "Set Edge Font Face Bypass",
      "topics": [
        "setEdgeFontFaceBypass"
      ]
    },
    {
      "page": "setEdgeFontFaceDefault",
      "title": "Set Edge Font Face Default",
      "topics": [
        "setEdgeFontFaceDefault"
      ]
    },
    {
      "page": "setEdgeFontFaceMapping",
      "title": "Set Edge Font Face Mapping",
      "topics": [
        "setEdgeFontFaceMapping"
      ]
    },
    {
      "page": "setEdgeFontSizeBypass",
      "title": "Set Edge Font Size Bypass",
      "topics": [
        "setEdgeFontSizeBypass"
      ]
    },
    {
      "page": "setEdgeFontSizeDefault",
      "title": "Set Edge Font Size Default",
      "topics": [
        "setEdgeFontSizeDefault"
      ]
    },
    {
      "page": "setEdgeFontSizeMapping",
      "title": "Set Edge Font Size Mapping",
      "topics": [
        "setEdgeFontSizeMapping"
      ]
    },
    {
      "page": "setEdgeLabelBypass",
      "title": "Set Edge Label Bypass",
      "topics": [
        "setEdgeLabelBypass"
      ]
    },
    {
      "page": "setEdgeLabelColorBypass",
      "title": "Set Edge Label Color Bypass",
      "topics": [
        "setEdgeLabelColorBypass"
      ]
    },
    {
      "page": "setEdgeLabelColorDefault",
      "title": "Set Edge Label Color Default",
      "topics": [
        "setEdgeLabelColorDefault"
      ]
    },
    {
      "page": "setEdgeLabelColorMapping",
      "title": "Set Edge Label Color Mapping",
      "topics": [
        "setEdgeLabelColorMapping"
      ]
    },
    {
      "page": "setEdgeLabelDefault",
      "title": "Set Edge Label Default",
      "topics": [
        "setEdgeLabelDefault"
      ]
    },
    {
      "page": "setEdgeLabelMapping",
      "title": "Set Edge Label Mapping",
      "topics": [
        "setEdgeLabelMapping"
      ]
    },
    {
      "page": "setEdgeLabelOpacityBypass",
      "title": "Set Edge Label Opacity Bypass",
      "topics": [
        "setEdgeLabelOpacityBypass"
      ]
    },
    {
      "page": "setEdgeLabelOpacityDefault",
      "title": "Set Edge Label Opacity Default",
      "topics": [
        "setEdgeLabelOpacityDefault"
      ]
    },
    {
      "page": "setEdgeLabelOpacityMapping",
      "title": "Set Edge Label Opacity Mapping",
      "topics": [
        "setEdgeLabelOpacityMapping"
      ]
    },
    {
      "page": "setEdgeLineStyleBypass",
      "title": "Set Edge Line Style Bypass",
      "topics": [
        "setEdgeLineStyleBypass"
      ]
    },
    {
      "page": "setEdgeLineStyleDefault",
      "title": "Set Edge Line Style Default",
      "topics": [
        "setEdgeLineStyleDefault"
      ]
    },
    {
      "page": "setEdgeLineStyleMapping",
      "title": "Set Edge Line Style Mapping",
      "topics": [
        "setEdgeLineStyleMapping"
      ]
    },
    {
      "page": "setEdgeLineWidthBypass",
      "title": "Set Edge Line Width Bypass",
      "topics": [
        "setEdgeLineWidthBypass"
      ]
    },
    {
      "page": "setEdgeLineWidthDefault",
      "title": "Set Edge Line Width Default",
      "topics": [
        "setEdgeLineWidthDefault"
      ]
    },
    {
      "page": "setEdgeLineWidthMapping",
      "title": "Set Edge Line Width Mapping",
      "topics": [
        "setEdgeLineWidthMapping"
      ]
    },
    {
      "page": "setEdgeOpacityBypass",
      "title": "Set Edge Opacity Bypass",
      "topics": [
        "setEdgeOpacityBypass"
      ]
    },
    {
      "page": "setEdgeOpacityDefault",
      "title": "Set Edge Opacity Default",
      "topics": [
        "setEdgeOpacityDefault"
      ]
    },
    {
      "page": "setEdgeOpacityMapping",
      "title": "Set Edge Opacity Mapping",
      "topics": [
        "setEdgeOpacityMapping"
      ]
    },
    {
      "page": "setEdgePropertyBypass",
      "title": "Set Edge Property Bypass",
      "topics": [
        "setEdgePropertyBypass"
      ]
    },
    {
      "page": "setEdgeSelectionColorDefault",
      "title": "Set Edge Selection Color Default",
      "topics": [
        "setEdgeSelectionColorDefault"
      ]
    },
    {
      "page": "setEdgeSourceArrowColorBypass",
      "title": "Set Edge Source Arrow Color Bypass",
      "topics": [
        "setEdgeSourceArrowColorBypass"
      ]
    },
    {
      "page": "setEdgeSourceArrowColorDefault",
      "title": "Set Edge Source Arrow Color Default",
      "topics": [
        "setEdgeSourceArrowColorDefault"
      ]
    },
    {
      "page": "setEdgeSourceArrowColorMapping",
      "title": "Set Edge Source Arrow Color Mapping",
      "topics": [
        "setEdgeSourceArrowColorMapping"
      ]
    },
    {
      "page": "setEdgeSourceArrowMapping",
      "title": "Set Edge Source Arrow Mapping",
      "topics": [
        "setEdgeSourceArrowMapping"
      ]
    },
    {
      "page": "setEdgeSourceArrowShapeBypass",
      "title": "Set Edge Source Arrow Shape Bypass",
      "topics": [
        "setEdgeSourceArrowShapeBypass"
      ]
    },
    {
      "page": "setEdgeSourceArrowShapeDefault",
      "title": "Set Edge Source Arrow Shape Default",
      "topics": [
        "setEdgeSourceArrowShapeDefault"
      ]
    },
    {
      "page": "setEdgeSourceArrowShapeMapping",
      "title": "Set Edge Source Arrow Shape Mapping",
      "topics": [
        "setEdgeSourceArrowShapeMapping"
      ]
    },
    {
      "page": "setEdgeTargetArrowColorBypass",
      "title": "Set Edge Target Arrow Color Bypass",
      "topics": [
        "setEdgeTargetArrowColorBypass"
      ]
    },
    {
      "page": "setEdgeTargetArrowColorDefault",
      "title": "Set Edge Target Arrow Color Default",
      "topics": [
        "setEdgeTargetArrowColorDefault"
      ]
    },
    {
      "page": "setEdgeTargetArrowColorMapping",
      "title": "Set Edge Target Arrow Color Mapping",
      "topics": [
        "setEdgeTargetArrowColorMapping"
      ]
    },
    {
      "page": "setEdgeTargetArrowMapping",
      "title": "Set Edge Target Arrow Mapping",
      "topics": [
        "setEdgeTargetArrowMapping"
      ]
    },
    {
      "page": "setEdgeTargetArrowShapeBypass",
      "title": "Set Edge Target Arrow Shape Bypass",
      "topics": [
        "setEdgeTargetArrowShapeBypass"
      ]
    },
    {
      "page": "setEdgeTargetArrowShapeDefault",
      "title": "Set Edge Target Arrow Shape Default",
      "topics": [
        "setEdgeTargetArrowShapeDefault"
      ]
    },
    {
      "page": "setEdgeTargetArrowShapeMapping",
      "title": "Set Edge Target Arrow Shape Mapping",
      "topics": [
        "setEdgeTargetArrowShapeMapping"
      ]
    },
    {
      "page": "setEdgeTooltipBypass",
      "title": "Set Edge Tooltip Bypass",
      "topics": [
        "setEdgeTooltipBypass"
      ]
    },
    {
      "page": "setEdgeTooltipDefault",
      "title": "Set Edge Tooltip Default",
      "topics": [
        "setEdgeTooltipDefault"
      ]
    },
    {
      "page": "setEdgeTooltipMapping",
      "title": "Set Edge Tooltip Mapping",
      "topics": [
        "setEdgeTooltipMapping"
      ]
    },
    {
      "page": "setLayoutProperties",
      "title": "Set Layout Properties",
      "topics": [
        "setLayoutProperties"
      ]
    },
    {
      "page": "setModelPropagationSecs",
      "title": "Set Model Propagation Delay",
      "topics": [
        "setModelPropagationSecs"
      ]
    },
    {
      "page": "setNetworkCenterBypass",
      "title": "Set Network Center Bypass",
      "topics": [
        "setNetworkCenterBypass"
      ]
    },
    {
      "page": "setNetworkPropertyBypass",
      "title": "Set Network Property Bypass",
      "topics": [
        "setNetworkPropertyBypass"
      ]
    },
    {
      "page": "setNetworkZoomBypass",
      "title": "Set Network Zoom Bypass",
      "topics": [
        "setNetworkZoomBypass"
      ]
    },
    {
      "page": "setNodeBorderColorBypass",
      "title": "Set Node Border Color Bypass",
      "topics": [
        "setNodeBorderColorBypass"
      ]
    },
    {
      "page": "setNodeBorderColorDefault",
      "title": "Set Node Border Color Default",
      "topics": [
        "setNodeBorderColorDefault"
      ]
    },
    {
      "page": "setNodeBorderColorMapping",
      "title": "Set Node Border Color Mapping",
      "topics": [
        "setNodeBorderColorMapping"
      ]
    },
    {
      "page": "setNodeBorderOpacityBypass",
      "title": "Set Node Border Opacity Bypass",
      "topics": [
        "setNodeBorderOpacityBypass"
      ]
    },
    {
      "page": "setNodeBorderOpacityDefault",
      "title": "Set Node Border Opacity Default",
      "topics": [
        "setNodeBorderOpacityDefault"
      ]
    },
    {
      "page": "setNodeBorderOpacityMapping",
      "title": "Set Node Border Opacity Mapping",
      "topics": [
        "setNodeBorderOpacityMapping"
      ]
    },
    {
      "page": "setNodeBorderWidthBypass",
      "title": "Set Node Border Width Bypass",
      "topics": [
        "setNodeBorderWidthBypass"
      ]
    },
    {
      "page": "setNodeBorderWidthDefault",
      "title": "Set Node Border Width Default",
      "topics": [
        "setNodeBorderWidthDefault"
      ]
    },
    {
      "page": "setNodeBorderWidthMapping",
      "title": "Set Node Border Width Mapping",
      "topics": [
        "setNodeBorderWidthMapping"
      ]
    },
    {
      "page": "setNodeColorBypass",
      "title": "Set Node Color Bypass",
      "topics": [
        "setNodeColorBypass"
      ]
    },
    {
      "page": "setNodeColorDefault",
      "title": "Set Node Color Default",
      "topics": [
        "setNodeColorDefault"
      ]
    },
    {
      "page": "setNodeColorMapping",
      "title": "Set Node Color Mapping",
      "topics": [
        "setNodeColorMapping"
      ]
    },
    {
      "page": "setNodeComboOpacityMapping",
      "title": "Set Node Combo Opacity Mapping",
      "topics": [
        "setNodeComboOpacityMapping"
      ]
    },
    {
      "page": "setNodeCustomBarChart",
      "title": "Set Node Custom Bar Chart",
      "topics": [
        "setNodeCustomBarChart"
      ]
    },
    {
      "page": "setNodeCustomBoxChart",
      "title": "Set Node Custom Box Chart",
      "topics": [
        "setNodeCustomBoxChart"
      ]
    },
    {
      "page": "setNodeCustomHeatMapChart",
      "title": "Set Node Custom HeatMap Chart",
      "topics": [
        "setNodeCustomHeatMapChart"
      ]
    },
    {
      "page": "setNodeCustomLinearGradient",
      "title": "Set Node Custom Linear Gradient",
      "topics": [
        "setNodeCustomLinearGradient"
      ]
    },
    {
      "page": "setNodeCustomLineChart",
      "title": "Set Node Custom Line Chart",
      "topics": [
        "setNodeCustomLineChart"
      ]
    },
    {
      "page": "setNodeCustomPieChart",
      "title": "Set Node Custom Pie Chart",
      "topics": [
        "setNodeCustomPieChart"
      ]
    },
    {
      "page": "setNodeCustomPosition",
      "title": "Set Node Custom Position",
      "topics": [
        "setNodeCustomPosition"
      ]
    },
    {
      "page": "setNodeCustomRadialGradient",
      "title": "Set Node Custom Radial Gradient",
      "topics": [
        "setNodeCustomRadialGradient"
      ]
    },
    {
      "page": "setNodeCustomRingChart",
      "title": "Set Node Custom Ring Chart",
      "topics": [
        "setNodeCustomRingChart"
      ]
    },
    {
      "page": "setNodeFillOpacityBypass",
      "title": "Set Node Fill Opacity Bypass",
      "topics": [
        "setNodeFillOpacityBypass"
      ]
    },
    {
      "page": "setNodeFillOpacityDefault",
      "title": "Set Node Fill Opacity Default",
      "topics": [
        "setNodeFillOpacityDefault"
      ]
    },
    {
      "page": "setNodeFillOpacityMapping",
      "title": "Set Node Fill Opacity Mapping",
      "topics": [
        "setNodeFillOpacityMapping"
      ]
    },
    {
      "page": "setNodeFontFaceBypass",
      "title": "Set Node Font Face Bypass",
      "topics": [
        "setNodeFontFaceBypass"
      ]
    },
    {
      "page": "setNodeFontFaceDefault",
      "title": "Set Node Font Face Default",
      "topics": [
        "setNodeFontFaceDefault"
      ]
    },
    {
      "page": "setNodeFontFaceMapping",
      "title": "Set Node Font Face Mapping",
      "topics": [
        "setNodeFontFaceMapping"
      ]
    },
    {
      "page": "setNodeFontSizeBypass",
      "title": "Set Node Font Size Bypass",
      "topics": [
        "setNodeFontSizeBypass"
      ]
    },
    {
      "page": "setNodeFontSizeDefault",
      "title": "Set Node Font Size Default",
      "topics": [
        "setNodeFontSizeDefault"
      ]
    },
    {
      "page": "setNodeFontSizeMapping",
      "title": "Set Node Font Size Mapping",
      "topics": [
        "setNodeFontSizeMapping"
      ]
    },
    {
      "page": "setNodeHeightBypass",
      "title": "Set Node Height Bypass",
      "topics": [
        "setNodeHeightBypass"
      ]
    },
    {
      "page": "setNodeHeightDefault",
      "title": "Set Node Height Default",
      "topics": [
        "setNodeHeightDefault"
      ]
    },
    {
      "page": "setNodeHeightMapping",
      "title": "Set Node Height Mapping",
      "topics": [
        "setNodeHeightMapping"
      ]
    },
    {
      "page": "setNodeLabelBypass",
      "title": "Set Node Label Bypass",
      "topics": [
        "setNodeLabelBypass"
      ]
    },
    {
      "page": "setNodeLabelColorBypass",
      "title": "Set Node Label Color Bypass",
      "topics": [
        "setNodeLabelColorBypass"
      ]
    },
    {
      "page": "setNodeLabelColorDefault",
      "title": "Set Node Label Color Default",
      "topics": [
        "setNodeLabelColorDefault"
      ]
    },
    {
      "page": "setNodeLabelColorMapping",
      "title": "Set Node Label Color Mapping",
      "topics": [
        "setNodeLabelColorMapping"
      ]
    },
    {
      "page": "setNodeLabelDefault",
      "title": "Set Node Label Default",
      "topics": [
        "setNodeLabelDefault"
      ]
    },
    {
      "page": "setNodeLabelMapping",
      "title": "Set Node Label Mapping",
      "topics": [
        "setNodeLabelMapping"
      ]
    },
    {
      "page": "setNodeLabelOpacityBypass",
      "title": "Set Node Label Opacity Bypass",
      "topics": [
        "setNodeLabelOpacityBypass"
      ]
    },
    {
      "page": "setNodeLabelOpacityDefault",
      "title": "Set Node Label Opacity Default",
      "topics": [
        "setNodeLabelOpacityDefault"
      ]
    },
    {
      "page": "setNodeLabelOpacityMapping",
      "title": "Set Node Label Opacity Mapping",
      "topics": [
        "setNodeLabelOpacityMapping"
      ]
    },
    {
      "page": "setNodeLabelPositionBypass",
      "title": "Set Node Label Position Bypass",
      "topics": [
        "setNodeLabelPositionBypass"
      ]
    },
    {
      "page": "setNodeLabelPositionDefault",
      "title": "Set Node Label Position Default",
      "topics": [
        "setNodeLabelPositionDefault"
      ]
    },
    {
      "page": "setNodeOpacityBypass",
      "title": "Set Node Opacity Bypass",
      "topics": [
        "setNodeOpacityBypass"
      ]
    },
    {
      "page": "setNodePositionBypass",
      "title": "Set Node Position Bypass",
      "topics": [
        "setNodePositionBypass"
      ]
    },
    {
      "page": "setNodePropertyBypass",
      "title": "Set Node Property Bypass",
      "topics": [
        "setNodePropertyBypass"
      ]
    },
    {
      "page": "setNodeSelectionColorDefault",
      "title": "Set Node Selection Color Default",
      "topics": [
        "setNodeSelectionColorDefault"
      ]
    },
    {
      "page": "setNodeShapeBypass",
      "title": "Set Node Shape Bypass",
      "topics": [
        "setNodeShapeBypass"
      ]
    },
    {
      "page": "setNodeShapeDefault",
      "title": "Set Node Shape Default",
      "topics": [
        "setNodeShapeDefault"
      ]
    },
    {
      "page": "setNodeShapeMapping",
      "title": "Set Node Shape Mapping",
      "topics": [
        "setNodeShapeMapping"
      ]
    },
    {
      "page": "setNodeSizeBypass",
      "title": "Set Node Size Bypass",
      "topics": [
        "setNodeSizeBypass"
      ]
    },
    {
      "page": "setNodeSizeDefault",
      "title": "Set Node Size Default",
      "topics": [
        "setNodeSizeDefault"
      ]
    },
    {
      "page": "setNodeSizeMapping",
      "title": "Set Node Size Mapping",
      "topics": [
        "setNodeSizeMapping"
      ]
    },
    {
      "page": "setNodeTooltipBypass",
      "title": "Set Node Tooltip Bypass",
      "topics": [
        "setNodeTooltipBypass"
      ]
    },
    {
      "page": "setNodeTooltipDefault",
      "title": "Set Node Tooltip Default",
      "topics": [
        "setNodeTooltipDefault"
      ]
    },
    {
      "page": "setNodeTooltipMapping",
      "title": "Set Node Tooltip Mapping",
      "topics": [
        "setNodeTooltipMapping"
      ]
    },
    {
      "page": "setNodeWidthBypass",
      "title": "Set Node Width Bypass",
      "topics": [
        "setNodeWidthBypass"
      ]
    },
    {
      "page": "setNodeWidthDefault",
      "title": "Set Node Width Default",
      "topics": [
        "setNodeWidthDefault"
      ]
    },
    {
      "page": "setNodeWidthMapping",
      "title": "Set Node Width Mapping",
      "topics": [
        "setNodeWidthMapping"
      ]
    },
    {
      "page": "setNotebookIsRunning",
      "title": "setNotebookIsRunning",
      "topics": [
        "setNotebookIsRunning"
      ]
    },
    {
      "page": "setSandboxReinitialize",
      "title": "setSandboxReinitialize",
      "topics": [
        "setSandboxReinitialize"
      ]
    },
    {
      "page": "setStyleDependencies",
      "title": "Set Style Dependencies",
      "topics": [
        "setStyleDependencies"
      ]
    },
    {
      "page": "setVisualPropertyDefault",
      "title": "Set Visual Property Default",
      "topics": [
        "setVisualPropertyDefault"
      ]
    },
    {
      "page": "setVisualStyle",
      "title": "Set Visual Style",
      "topics": [
        "setVisualStyle"
      ]
    },
    {
      "page": "spoofResponse-class",
      "title": "spoofResponse",
      "topics": [
        "spoofResponse",
        "spoofResponse-class"
      ]
    },
    {
      "page": "syncNodeCustomGraphicsSize",
      "title": "Sync Node Custom Graphics Size",
      "topics": [
        "syncNodeCustomGraphicsSize"
      ]
    },
    {
      "page": "toggleGraphicsDetails",
      "title": "Toggle Graphics Details",
      "topics": [
        "toggleGraphicsDetails"
      ]
    },
    {
      "page": "ungroupAnnotation",
      "title": "Ungroup Annotation Group",
      "topics": [
        "ungroupAnnotation"
      ]
    },
    {
      "page": "unhideAll",
      "title": "Unhide All",
      "topics": [
        "unhideAll"
      ]
    },
    {
      "page": "unhideEdges",
      "title": "Unhide Edges",
      "topics": [
        "unhideEdges"
      ]
    },
    {
      "page": "unhideNodes",
      "title": "Unhide Nodes",
      "topics": [
        "unhideNodes"
      ]
    },
    {
      "page": "uninstallApp",
      "title": "Uninstall App",
      "topics": [
        "uninstallApp"
      ]
    },
    {
      "page": "UpdateAnnotationBoundedText",
      "title": "Update Bounded Text Annotation",
      "topics": [
        "UpdateAnnotationBoundedText"
      ]
    },
    {
      "page": "updateAnnotationImage",
      "title": "Update Image Annotation",
      "topics": [
        "updateAnnotationImage"
      ]
    },
    {
      "page": "updateAnnotationShape",
      "title": "Update Shape Annotation",
      "topics": [
        "updateAnnotationShape"
      ]
    },
    {
      "page": "updateAnnotationText",
      "title": "Update Text Annotation",
      "topics": [
        "updateAnnotationText"
      ]
    },
    {
      "page": "updateApp",
      "title": "Update App",
      "topics": [
        "updateApp"
      ]
    },
    {
      "page": "updateGroupAnnotation",
      "title": "Update Group Annotation",
      "topics": [
        "updateGroupAnnotation"
      ]
    },
    {
      "page": "updateNetworkInNDEx",
      "title": "Update Network In NDEx",
      "topics": [
        "updateNetworkInNDEx"
      ]
    },
    {
      "page": "updateStyleDefaults",
      "title": "Updates the default values of visual properties in a style",
      "topics": [
        "updateStyleDefaults"
      ]
    },
    {
      "page": "updateStyleMapping",
      "title": "Updates a visual property mapping in a style",
      "topics": [
        "updateStyleMapping"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/RCy3/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "base64enc",
    "base64url",
    "BiocGenerics",
    "bitops",
    "caTools",
    "cli",
    "crayon",
    "curl",
    "digest",
    "evaluate",
    "fastmap",
    "fs",
    "generics",
    "glue",
    "gplots",
    "graph",
    "gtools",
    "htmltools",
    "httr",
    "IRdisplay",
    "IRkernel",
    "jsonlite",
    "KernSmooth",
    "lifecycle",
    "mime",
    "openssl",
    "pbdZMQ",
    "pillar",
    "R6",
    "RColorBrewer",
    "RCurl",
    "repr",
    "RJSONIO",
    "rlang",
    "stringi",
    "sys",
    "utf8",
    "uuid",
    "vctrs",
    "XML"
  ],
  "_vignettes": [
    {
      "source": "Overview-of-RCy3.Rmd",
      "filename": "Overview-of-RCy3.html",
      "title": "Overview of RCy3",
      "author": "by Alexander Pico, Tanja Muetze, Georgi Kolishovski, Paul Shannon",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Prerequisites",
        "Getting started",
        "My first network",
        "Switch styles",
        "My own style",
        "Bioconductor graph example",
        "Add node attributes",
        "Modifying the display:  defaults and mappings",
        "Selecting nodes",
        "Saving and export",
        "Saving high resolution image files",
        "Browse available functions, commands and arguments",
        "More examples",
        "Development",
        "Credits",
        "References"
      ],
      "created": "2018-03-18 03:01:10",
      "modified": "2019-09-28 22:17:02",
      "commits": 19
    },
    {
      "source": "Cytoscape-and-iGraph.Rmd",
      "filename": "Cytoscape-and-iGraph.html",
      "title": "Cytoscape and igraph",
      "author": "by Alexander Pico",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Required Software",
        "From igraph to Cytoscape",
        "From Cytoscape to igraph"
      ],
      "created": "2018-03-18 19:09:13",
      "modified": "2018-07-14 19:20:30",
      "commits": 13
    },
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