{ "_id": "6a51d8259b92047c28d51960", "biocViews": "Microarray, DifferentialExpression", "Package": "RBM", "Version": "1.45.0", "Date": "2014-10-02", "Title": "RBM: a R package for microarray and RNA-Seq data analysis", "Author": "Dongmei Li and Chin-Yuan Liang", "Maintainer": "Dongmei Li ", "Description": "Use A Resampling-Based Empirical Bayes Approach to Assess\nDifferential Expression in Two-Color Microarrays and RNA-Seq\ndata sets.", "License": "GPL (>= 2)", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:57 UTC", "RemoteUrl": "https://github.com/bioc/RBM", "RemoteRef": "HEAD", "RemoteSha": "5bc99728da9a4f404d4029dab193578f9bad882f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-11 05:40:29 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "RBM_1.45.0.tar.gz", "_fileid": "https://r2.ropensci.org/c9d86fd840753f7ee8dbaf4db1e3101c6705f38f95146f8ff982f5f1a39c4fbf", "_filesize": 349526, "_sha256": "c9d86fd840753f7ee8dbaf4db1e3101c6705f38f95146f8ff982f5f1a39c4fbf", "_expires": "2026-10-19T05:44:03.000Z", "_created": "2026-07-11T05:40:29.000Z", "_published": "2026-07-11T05:44:05.583Z", "_bioccheck": { "error": 1, "warning": 3, "note": 9 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182", "_status": "success", "_upstream": "https://github.com/bioc/RBM", "_commit": { "id": "5bc99728da9a4f404d4029dab193578f9bad882f", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380057 }, "_maintainer": { "name": "Dongmei Li", "email": "dongmei_li@urmc.rochester.edu", "login": "dongmeili2017", "twitter": "@dongmeiliur", "description": "", "uuid": 25984105 }, "_distro": "resolute", "_jobs": [ { "job": 86515687998, "time": 137, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8245326413" }, { "job": 86515687989, "time": 184, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8245332858" }, { "job": 86515687999, "time": 148, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8245327904" }, { "job": 86515687992, "time": 105, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8245322138" }, { "job": 86515688002, "time": 108, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8245322419" }, { "job": 86515481061, "time": 174, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8245307199" }, { "job": 86515687997, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8245321021" }, { "job": 86515688048, "time": 78, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8245318464" }, { "job": 86515688011, "time": 100, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8245321741" }, { "job": 86515688009, "time": 83, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8245319123" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2.0", "role": "Depends" }, { "package": "limma", "role": "Depends" }, { "package": "marray", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23" } ], "_topics": [ "microarray", "differentialexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 438, "source": "https://www.bioconductor.org/packages/stats/bioc/RBM" }, "_mentions": 14, "_searchresults": 18, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/RBM.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "RBM_F", "RBM_T" ], "_datasets": [ { "name": "ovarian_cancer_methylation", "title": "ovarian cancer methylation example from United Kingdom Ovarian Cancer Population Study (UKOPS)", "object": "ovarian_cancer_methylation", "file": "ovarian_cancer_methylation.rda", "class": [ "data.frame" ], "fields": [ "IlmnID", "Beta", "exmdata2[, 2]", "exmdata3[, 2]", "exmdata4[, 2]", "exmdata5[, 2]", "exmdata6[, 2]", "exmdata7[, 2]", "exmdata8[, 2]" ], "rows": 1000, "table": true, "tojson": true } ], "_help": [ { "page": "RBM-package", "title": "RBM:a package for microarray and RNA-Seq data analysis", "topics": [ "RBM-package", "RBM" ] }, { "page": "ovarian_cancer_methylation", "title": "ovarian cancer methylation example from United Kingdom Ovarian Cancer Population Study (UKOPS)", "topics": [ "ovarian_cancer_methylation" ] }, { "page": "RBM_F", "title": "RBM_F: a R function for microarray and RNA-Seq data analysis for designs with more than two groups", "topics": [ "RBM_F" ] }, { "page": "RBM_T", "title": "RBM_T: a R function for microarray and RNA-Seq data analysis for two-group comparisons", "topics": [ "RBM_T" ] } ], "_rundeps": [ "limma", "marray", "statmod" ], "_vignettes": [ { "source": "RBM.Rnw", "filename": "RBM.pdf", "title": "RBM", "engine": "utils::Sweave", "headings": [ "Overview", "Getting started", "RBM_T and RBM_F functions", "Ovarian cancer methylation example using the RBM_T function" ], "created": "2015-03-31 18:31:58", "modified": "2018-08-30 17:55:01", "commits": 2 } ], "_score": 4.556302500767288, "_indexed": true, "_nocasepkg": "rbm", "_universes": [ "bioc", "dongmeili2017" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.0", "date": "2026-07-11T05:43:21.000Z", "distro": "resolute", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/91dd5ffb205e2425ac2f2dc560993df5c32079c6bc16f15b1438c282e327f88c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.6.1", "os": "linux", "version": "1.45.0", "date": "2026-07-11T05:42:46.000Z", "distro": "resolute", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/94f40f5e452fb80595b5d5e8bdf9f5d886f7f7e02c20d1bbd42010ca2dcfa956", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.5.3", "os": "mac", "version": "1.45.0", "date": "2026-07-11T05:42:05.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/d10c0f9e98e17cc8c4094861d0681c6ba2ce395f340a49237e2de919093aa8fe", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.6.1", "os": "mac", "version": "1.45.0", "date": "2026-07-11T05:42:06.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/1b78acfc24a522598e5be6817fc2ab076b14997ceedfb68b9e97638bc49bb850", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.6.0", "os": "wasm", "version": "1.45.0", "date": "2026-07-11T05:42:18.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/80760daa0929b18ebaca6838cd7f5cbe96f072b96a23f1bb212bc962ddeb7a63", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.7.0", "os": "win", "version": "1.45.0", "date": "2026-07-11T05:41:32.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/d678df9c6e5bfe2eb5b6be78717fdb090c59de60a99ed06ac62f7c8eef5ed84b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.5.3", "os": "win", "version": "1.45.0", "date": "2026-07-11T05:41:54.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/59e933aadae0586d4503c3d58a3bc5cd361279474f524234a4d88b33acb2b83d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" }, { "r": "4.6.1", "os": "win", "version": "1.45.0", "date": "2026-07-11T05:41:39.000Z", "commit": "5bc99728da9a4f404d4029dab193578f9bad882f", "fileid": "https://r2.ropensci.org/7909e7ff92a5ef86d715e9311ecfa6879b93d30a5eb51459ef6ce549e6699043", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29141508182" } ] }