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  "Type": "Package",
  "Title": "An R package for RNA visualization and analysis",
  "Version": "1.41.0",
  "Date": "2015-11-02",
  "Author": "Daniel Lai, Irmtraud Meyer <irmtraud.meyer@cantab.net>",
  "Maintainer": "Daniel Lai <jujubix@cs.ubc.ca>",
  "Description": "A package for RNA basepair analysis, including the\nvisualization of basepairs as arc diagrams for easy comparison\nand annotation of sequence and structure.  Arc diagrams can\nadditionally be projected onto multiple sequence alignments to\nassess basepair conservation and covariation, with numerical\nmethods for computing statistics for each.",
  "License": "GPL-3",
  "biocViews": "Alignment, MultipleSequenceAlignment, Preprocessing,\nVisualization, DataImport, DataRepresentation,\nMultipleComparison",
  "URL": "http://www.e-rna.org/r-chie/",
  "NeedsCompilation": "no",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:42:09 UTC",
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    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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    "logseq",
    "maxHeight",
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    "plotArcs",
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    "structureMismatchScore",
    "unknottedGroups",
    "viennaToHelix",
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      "tojson": true
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        "length",
        "value"
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      "tojson": true
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    {
      "page": "R4RNA-package",
      "title": "An R package for RNA visualization and analysis",
      "topics": [
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        "R4RNA"
      ]
    },
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      "topics": [
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        "alignmentConservation",
        "alignmentCovariation",
        "alignmentPercentGaps",
        "baseConservation",
        "basepairCanonical",
        "basepairConservation",
        "basepairCovariation",
        "helixCanonical",
        "helixConservation",
        "helixCovariation"
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    },
    {
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      "topics": [
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      ]
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    {
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        "expandHelix"
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    },
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      "title": "Coerce to a Helix Data Frame",
      "topics": [
        "as.helix",
        "is.helix",
        "parseBracket"
      ]
    },
    {
      "page": "colourHelices",
      "title": "Assign colours to helices",
      "topics": [
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        "colourByCanonical",
        "colourByConservation",
        "colourByCount",
        "colourByCovariation",
        "colourByUnknottedGroups",
        "colourByValue",
        "defaultPalette"
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        "helixToConnect",
        "helixToVienna",
        "viennaToHelix"
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      "topics": [
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        "maxHeight"
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      "title": "Helices predicted by TRANSAT with p-values",
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        "logseq"
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        "plotArcs",
        "plotDoubleHelix",
        "plotHelix",
        "plotOverlapHelix"
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        "readConnect",
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        "readVienna"
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    },
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      ]
    },
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      ]
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