{ "_id": "6a1bd09f1d7bb097a0a141ff", "Package": "R3CPET", "Type": "Package", "Title": "3CPET: Finding Co-factor Complexes in Chia-PET experiment using\na Hierarchical Dirichlet Process", "Description": "The package provides a method to infer the set of proteins\nthat are more probably to work together to maintain chormatin\ninteraction given a ChIA-PET experiment results.", "Version": "1.45.1", "Date": "2020-11-05", "Author": "Djekidel MN, Yang Chen et al.", "Maintainer": "Mohamed Nadhir Djekidel ", "URL": "https://github.com/sirusb/R3CPET", "BugReports": "https://github.com/sirusb/R3CPET/issues", "License": "GPL (>=2)", "VignetteBuilder": "knitr", "biocViews": "NetworkInference, GenePrediction, Bayesian, GraphAndNetwork,\nNetwork, GeneExpression, HiC", "Packaged": { "Date": "2026-05-29 22:01:00 UTC", "User": "root" }, "NeedsCompilation": "yes", "Config/Bioconductor/UnsupportedPlatforms": "macosx", "Config/pak/sysreqs": "cmake libglpk-dev make libbz2-dev libicu-dev\nliblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-29 18:37:17 UTC", "RemoteUrl": "https://github.com/bioc/R3CPET", "RemoteRef": "HEAD", "RemoteSha": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "MD5sum": "ef98dc1764a7964a9a330bfa0c7cfb3d", "_user": "bioc", "_type": "src", "_file": "R3CPET_1.45.1.tar.gz", "_fileid": "6e2649987f4348c6e41e8277f56fbfdef7f046ab39262b117fe077f7a2d4ba34", "_filesize": 5569859, "_sha256": "6e2649987f4348c6e41e8277f56fbfdef7f046ab39262b117fe077f7a2d4ba34", "_created": "2026-05-29T22:01:00.000Z", "_published": "2026-05-31T06:09:35.432Z", "_jobs": [ { "job": 78703903902, "time": 301, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7314270519" }, { "job": 78703904079, "time": 466, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7302084068" }, { "job": 78703904085, "time": 556, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7302105255" }, { "job": 78703904130, "time": 463, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7302083722" }, { "job": 78703904088, "time": 541, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7302102009" }, { "job": 78703903922, "time": 192, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78703903921, "time": 283, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78703903935, "time": 129, "config": "macos-release-arm64", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78703903923, "time": 265, "config": "macos-release-x86_64", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78703903866, "time": 435, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7301968688" }, { "job": 78703903896, "time": 248, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78703904076, "time": 841, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7302170700" }, { "job": 78703904123, "time": 787, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7302158916" }, { "job": 78703904084, "time": 759, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7302152104" } ], "_bioccheck": { "error": 1, "warning": 4, "note": 16 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/R3CPET", "_commit": { "id": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "Bump version\n", "time": 1780079837 }, "_maintainer": { "name": "Mohamed Nadhir Djekidel", "email": "djek.nad@gmail.com", "login": "sirusb", "description": "", "uuid": 3537501 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2", "role": "Depends" }, { "package": "Rcpp", "version": ">= 0.10.4", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "methods", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "pheatmap", "role": "Imports" }, { "package": "clValid", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "RCurl", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "IRanges", "version": ">= 2.13.12", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" }, { "package": "GenomicRanges", "version": ">= 1.31.8", "role": "Imports" }, { "package": "ggbio", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg19.knownGene", "role": "Suggests" }, { "package": "biovizBase", "role": "Suggests" }, { "package": "biomaRt", "role": "Suggests" }, { "package": "AnnotationDbi", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" }, { "package": "ChIPpeakAnno", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-22", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23" } ], "_topics": [ "networkinference", "geneprediction", "bayesian", "graphandnetwork", "network", "geneexpression", "hic", "chia-pet", "chromatin-interaction", "dirichlet-process-mixtures", "transcription-facto", "cpp" ], "_stars": 4, "_contributors": [ { "user": "sirusb", "count": 54, "uuid": 3537501 }, { "user": "dtenenba", "count": 8, "uuid": 2286826 }, { "user": "nturaga", "count": 6, "uuid": 2746443 }, { "user": "hpages", "count": 3, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "link-ny", "count": 1, "uuid": 4392950 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 }, { "user": "kkkaiqiang", "count": 1, "uuid": 34180702 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 372, "source": "https://www.bioconductor.org/packages/stats/bioc/R3CPET" }, "_mentions": 1, "_devurl": "https://github.com/sirusb/r3cpet", "_searchresults": 8, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/R3CPET.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/sirusb/r3cpet", "_realowner": "bioc", "_cranurl": false, "_exports": [ "annotateExpression", "betas", "buildNetworks", "ChiapetExperimentData", "ChromMaintainers", "clusterInteractions", "CreateCenteredBED", "createIndexes", "createServer", "docPerTopic", "GenerateNetworks", "getClusters", "getRegionsIncluster", "getRegionsInNetwork", "GOEnrich.folder", "GOEnrich.networks", "HLDAResult", "InferNetworks", "loadPETs", "loadPPI", "loadTFBS", "NetworkCollection", "networks", "outputGenesPerClusterToDir", "outputGenesPerNetworkToDir", "pet", "pet<-", "plot3CPETRes", "plotTrack", "ppi", "ppi<-", "PrepareData", "sizes", "TF", "tfbs", "tfbs<-", "topEdges", "topNodes", "updateResults", "visualizeCircos", "visualizeInteractions", "wordsPerTopic" ], "_datasets": [ { "name": "Chromosoms", "title": "Human chromosom lenghts", "object": "chromosoms", "file": "chromosoms.RData", "class": [ "data.frame" ], "fields": [ "V1", "V2" ], "rows": 24, "table": true, "tojson": true }, { "name": "geneLocations.nucleus", "title": "Nucleus located genes", "object": "geneLocations", "file": "geneLocations.RData", "class": [ "data.frame" ], "fields": [ "hprd_id", "isoform_id", "refseq_id", "geneSymbol", "isoform_specifity_status", "molecular_function_term", "molecular_function_reference_id", "biological_process_term", "biological_process_reference_id", "cellular_component_term", "cellular_component_reference_id" ], "rows": 5736, "table": true, "tojson": true }, { "name": "PPI.Biogrid", "title": "Biogrid Network", "object": "Biogrid", "file": "Biogrid.RData", "class": [ "igraph" ], "fields": [], "table": false, "tojson": false }, { "name": "PPI.HPRD", "title": "HPRD protein interaction Network", "object": "HPRD", "file": "HPRD.RData", "class": [ "igraph" ], "fields": [], "table": false, "tojson": false }, { "name": "RPKMS", "title": "A gene expression dataset", "object": "RPKMS", "file": "RPKMS.RData", "class": [ "data.frame" ], "fields": [ "GeneSymbol", "RPKM" ], "rows": 30627, "table": true, "tojson": true } ], "_help": [ { "page": "R3CPET-package", "title": "3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process", "topics": [ "R3CPET-package", "R3CPET" ] }, { "page": "annotateExpression-methods", "title": "Add the gene expression attribute to the graph nodes", "topics": [ "annotateExpression", "annotateExpression,ChromMaintainers,data.frame-method", "annotateExpression-methods" ] }, { "page": "Biogrid", "title": "Biogrid Network", "topics": [ "Biogrid", "PPI.Biogrid" ] }, { "page": "buildNetworks-methods", "title": "Building interaction networks connecting interacting regions", "topics": [ "buildNetworks", "buildNetworks,ChiapetExperimentData-method" ] }, { "page": "ChiapetExperimentData-class", "title": "3CPET used raw data", "topics": [ "ChiapetExperimentData", "ChiapetExperimentData-class", "pet", "pet,ChiapetExperimentData-method", "pet-methods", "pet<-", "pet<-,ChiapetExperimentData-method", "ppi", "ppi,ChiapetExperimentData-method", "ppi-methods", "ppi<-", "ppi<-,ChiapetExperimentData-method", "tfbs", "tfbs,ChiapetExperimentData-method", "tfbs-methods", "tfbs<-", "tfbs<-,ChiapetExperimentData-method" ] }, { "page": "ChromMaintainers-class", "title": "Chomatin maintainer networks", "topics": [ "ChromMaintainers", "ChromMaintainers-class", "GenerateGmlNetworks", "GenerateGmlNetworks,ChromMaintainers-method", "GenerateGmlNetworks-methods", "getClusters", "getClusters,ChromMaintainers-method", "getClusters-methods", "networks,ChromMaintainers-method", "topEdges", "topEdges,ChromMaintainers-method", "topEdges-methods", "topNodes", "topNodes,ChromMaintainers-method", "topNodes-methods" ] }, { "page": "chromosoms", "title": "Human chromosom lenghts", "topics": [ "Chromosoms", "chromosoms" ] }, { "page": "cluesOrSota-class", "title": "Wrapper for 'clues' and 'sota' S3 classes", "topics": [ "cluesOrSota-class" ] }, { "page": "clusterInteractions-methods", "title": "Grouping DNA interactions by enrichment profile", "topics": [ "clusterInteractions", "clusterInteractions,ChromMaintainers-method" ] }, { "page": "CreateCenteredBED-methods", "title": "Create centered interactions", "topics": [ "CreateCenteredBED", "CreateCenteredBED,character-method", "CreateCenteredBED-methods" ] }, { "page": "createIndexes-methods", "title": "Preparing TF indexes per region", "topics": [ "createIndexes", "createIndexes,ChiapetExperimentData-method", "createIndexes-methods" ] }, { "page": "createServer-methods", "title": "Explore results in a web browser", "topics": [ "createServer", "createServer,ChiapetExperimentData,NetworkCollection,ChromMaintainers-method", "createServer-methods" ] }, { "page": "EnsemblToHGNC", "title": "Ensemble to HGNC conversion", "topics": [ "EnsemblToHGNC" ] }, { "page": "EntrezToHGNC", "title": "Entrez to HGNC conversion", "topics": [ "EntrezToHGNC" ] }, { "page": "geneLocations", "title": "Nucleus located genes", "topics": [ "geneLocations", "geneLocations.nucleus" ] }, { "page": "GenerateNetworks-methods", "title": "Generate a list of 'igraph' networks", "topics": [ "GenerateNetworks", "GenerateNetworks,ChromMaintainers-method", "GenerateNetworks-methods" ] }, { "page": "getRegionsIncluster-methods", "title": "list of interactions per cluster", "topics": [ "getRegionsIncluster", "getRegionsIncluster,ChromMaintainers,ChiapetExperimentData,numeric-method", "getRegionsIncluster-methods" ] }, { "page": "getRegionsInNetwork-methods", "title": "list of interactions per network", "topics": [ "getRegionsInNetwork", "getRegionsInNetwork,ChromMaintainers,ChiapetExperimentData,numeric-method", "getRegionsInNetwork-methods" ] }, { "page": "GOEnrich-methods", "title": "GO enrichment methods", "topics": [ "GOEnrich.folder", "GOEnrich.folder,character-method", "GOEnrich.folder-methods", "GOEnrich.networks", "GOEnrich.networks,ChromMaintainers-method", "GOEnrich.networks-methods" ] }, { "page": "HLDAResult-class", "title": "Class '\"HLDAResult\"'", "topics": [ "betas", "betas,HLDAResult-method", "betas-methods", "docPerTopic", "docPerTopic,HLDAResult-method", "docPerTopic-methods", "HLDAResult", "HLDAResult-class", "wordsPerTopic", "wordsPerTopic,HLDAResult-method", "wordsPerTopic-methods" ] }, { "page": "HPRD", "title": "HPRD protein interaction Network", "topics": [ "HPRD", "PPI.HPRD" ] }, { "page": "InferNetworks-methods", "title": "Network construction using Hierarchical Dirichlet Process", "topics": [ "InferNetworks", "InferNetworks,NetworkCollection-method", "InferNetworks-methods" ] }, { "page": "loadPETs-methods", "title": "Parsing ChIA-PET interaction data", "topics": [ "loadPETs", "loadPETs,ChiapetExperimentData,character-method", "loadPETs-methods" ] }, { "page": "loadPPI-methods", "title": "Setting the background protein-protein interaction", "topics": [ "loadPPI", "loadPPI,ChiapetExperimentData-method", "loadPPI-methods" ] }, { "page": "loadTFBS-methods", "title": "Loading TF binding sites", "topics": [ "loadTFBS", "loadTFBS,ChiapetExperimentData", "loadTFBS,ChiapetExperimentData,character-method", "loadTFBS-methods" ] }, { "page": "NetworkCollection-class", "title": "protein interaction networks maintaining DNA loops", "topics": [ "NetworkCollection", "NetworkCollection-class", "networks", "networks,NetworkCollection-method", "sizes", "sizes,NetworkCollection-method", "TF", "TF,NetworkCollection-method" ] }, { "page": "outputGenesPerClusterToDir-methods", "title": "List of genes in each cluster", "topics": [ "outputGenesPerClusterToDir", "outputGenesPerClusterToDir,ChromMaintainers,ChiapetExperimentData-method", "outputGenesPerClusterToDir-methods" ] }, { "page": "outputGenesPerNetworkToDir-methods", "title": "List of genes controlled by each network", "topics": [ "outputGenesPerNetworkToDir", "outputGenesPerNetworkToDir,ChromMaintainers,ChiapetExperimentData-method", "outputGenesPerNetworkToDir-methods" ] }, { "page": "plotRes-methods", "title": "Plotting clustering results", "topics": [ "plot3CPETRes", "plot3CPETRes,ChromMaintainers-method", "plot3CPETRes-methods" ] }, { "page": "plotTrack", "title": "Plot interaction on a genomic track", "topics": [ "plotTrack", "plotTrack,ChiapetExperimentData,GRanges-method", "plotTrack-methods" ] }, { "page": "PrepareData-methods", "title": "Loading the raw data all at once", "topics": [ "PrepareData", "PrepareData,character,character,logical-method", "PrepareData-methods" ] }, { "page": "RPKMS", "title": "A gene expression dataset", "topics": [ "RPKMS" ] }, { "page": "updateResults-methods", "title": "update top maintain networks elements", "topics": [ "updateResults", "updateResults,ChromMaintainers,NetworkCollection,numeric-method", "updateResults-methods" ] }, { "page": "visualizeCircos-methods", "title": "Generate circos plot per cluster", "topics": [ "visualizeCircos", "visualizeCircos,ChromMaintainers,ChiapetExperimentData,numeric-method", "visualizeCircos-methods" ] }, { "page": "visualizeInteractions-methods", "title": "Display a Circos plot of ChIA-pet interactions", "topics": [ "visualizeInteractions", "visualizeInteractions,ChiapetExperimentData,GRanges-method", "visualizeInteractions-methods" ] } ], "_readme": "https://github.com/bioc/R3CPET/raw/HEAD/README.md", "_rundeps": [ "abind", "AnnotationDbi", "AnnotationFilter", "askpass", "backports", "base64enc", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocManager", "BiocParallel", "Biostrings", "biovizBase", "bit", "bit64", "bitops", "blob", "BSgenome", "bslib", "cachem", "checkmate", "cigarillo", "class", "cli", "cluster", "clValid", "codetools", "colorspace", "cpp11", "crayon", "curl", "data.table", "DBI", "DelayedArray", "dichromat", "digest", "ensembldb", "evaluate", "farver", "fastmap", "fontawesome", "foreign", "formatR", "Formula", "fs", "futile.logger", "futile.options", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggbio", "ggplot2", "glue", "graph", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "httr", "igraph", "IRanges", "isoband", "jquerylib", "jsonlite", "KEGGREST", "knitr", "labeling", "lambda.r", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "nnet", "openssl", "OrganismDbi", "pheatmap", "pkgconfig", "plyr", "png", "ProtGenerics", "R6", "rappdirs", "RBGL", "RColorBrewer", "Rcpp", "RCurl", "reshape2", "restfulr", "Rhtslib", "rjson", "rlang", "rmarkdown", "rpart", "Rsamtools", "RSQLite", "rstudioapi", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "snow", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "sys", "tinytex", "UCSC.utils", "VariantAnnotation", "vctrs", "viridisLite", "withr", "xfun", "XML", "XVector", "yaml" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "R3CPET.Rnw", "filename": "R3CPET.pdf", "title": "3CPET: Finding Co-factor Complexes maintaining Chia-PET interactions", "engine": "knitr::knitr", "headings": [], "created": "2015-04-06 23:03:11", "modified": "2020-10-03 16:07:35", "commits": 6 } ], "_score": 5.623249290397901, "_indexed": true, "_nocasepkg": "r3cpet", "_universes": [ "bioc", "sirusb" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.1", "date": "2026-05-29T22:05:57.000Z", "distro": "noble", "arch": "aarch64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "6f5e226e735d94f437ac667ba85cff7dd8a9ef99831b25342f5fcdd42a2d46ba", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.7.0", "os": "linux", "version": "1.45.1", "date": "2026-05-29T22:06:23.000Z", "distro": "noble", "arch": "x86_64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "27b88c4451ea67483da06829ce00b7756ccef57f51f63a68ab37c05b036cbe57", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.6.0", "os": "linux", "version": "1.45.1", "date": "2026-05-29T22:06:08.000Z", "distro": "noble", "arch": "aarch64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "34b354fc579e7158e61b3f9005e8f4733822032c5d4dcbe9fa77b9447e005320", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.6.0", "os": "linux", "version": "1.45.1", "date": "2026-05-29T22:06:48.000Z", "distro": "noble", "arch": "x86_64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "f803f39de93a2771b73e9586ad0f26489b37aad86c1210978b2cd6fa00670960", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.7.0", "os": "win", "version": "1.45.1", "date": "2026-05-29T22:10:53.000Z", "arch": "x86_64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "ffc36e849ddd876b6ee00873da9e59e8fedadce9c7afed357531b835ad1db42b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.5.3", "os": "win", "version": "1.45.1", "date": "2026-05-29T22:09:48.000Z", "arch": "x86_64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "146b0306cb72a22cc1cb619a085c1af0f1fb40cdfcc84db4bbc58111793b6b84", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" }, { "r": "4.6.0", "os": "win", "version": "1.45.1", "date": "2026-05-29T22:10:17.000Z", "arch": "x86_64", "commit": "43f1f69e0efee863b0d8ff1492a72c7b394faeff", "fileid": "dc2627848896d30e8c978b4fbbea53b63f52ad101059c98c2b4ab6ba690079a7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664195025" } ] }