{ "_id": "6a1bdc481d7bb097a0a173fb", "Package": "QSutils", "Type": "Package", "Title": "Quasispecies Diversity", "Version": "1.31.0", "Date": "2024-04-23", "Authors@R": "c(person(\"Mercedes\", \"Guerrero-Murillo\", email=\"mergumu@gmail.com\", role=c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5556-2460\")), person(\"Josep\", \"Gregori i Font\", role=c (\"aut\"), comment = c(ORCID = \"0000-0002-4253-8015\")))", "Encoding": "UTF-8", "Description": "Set of utility functions for viral quasispecies analysis\nwith NGS data. Most functions are equally useful for\nmetagenomic studies. There are three main types: (1) data\nmanipulation and exploration—functions useful for converting\nreads to haplotypes and frequencies, repairing reads,\nintersecting strand haplotypes, and visualizing haplotype\nalignments. (2) diversity indices—functions to compute\ndiversity and entropy, in which incidence, abundance, and\nfunctional indices are considered. 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