{ "_id": "6ae7469b818c9e3ef6dbbc72", "Package": "QFeatures", "Title": "Quantitative features for mass spectrometry data", "Version": "1.23.2", "Authors@R": "c(person(\"Laurent\", \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\"),\nrole = c(\"aut\", \"cre\")),\nperson(\"Christophe\", \"Vanderaa\",\nemail = \"christophe.vanderaa@uclouvain.be\",\ncomment = c(ORCID = \"0000-0001-7443-5427\"),\nrole = \"aut\"),\nperson(\"Karolína\", \"Kryštofová\",\ncomment = c(ORCID = \"0009-0004-2896-2188\"),\nrole = \"ctb\"),\nperson(\"Léopold\", \"Guyot\",\nemail = \"leopold.guyot@uclouvain.be\",\ncomment = c(ORCID = \"0009-0005-2217-3855\"),\nrole = \"ctb\"))", "Description": "The QFeatures infrastructure enables the management and\nprocessing of quantitative features for high-throughput mass\nspectrometry assays. It provides a familiar Bioconductor user\nexperience to manages quantitative data across different assay\nlevels (such as peptide spectrum matches, peptides and\nproteins) in a coherent and tractable format.", "biocViews": "Infrastructure, MassSpectrometry, Proteomics, Metabolomics", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "BugReports": "https://github.com/rformassspectrometry/QFeatures/issues", "URL": "https://rformassspectrometry.github.io/QFeatures", "Collate": "'AllGenerics.R' 'AssayLinks.R' 'QFeatures-class.R'\n'QFeatures-functions.R' 'QFeatures-longForm.R'\n'QFeatures-processing.R' 'QFeatures-filter.R'\n'QFeatures-missing-data.R' 'QFeatures-aggregation.R'\n'QFeatures-imputation.R' 'QFeatures-join.R'\n'QFeatures-validity.R' 'SummarizedExperiment-methods.R'\n'subsetBy-methods.R' 'readQFeatures.R'\n'readQFeaturesFromDIANN.R' 'data.R' 'reduce.R' 'utils.R'\n'display.R'", "Roxygen": "list(markdown=TRUE)", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-03 18:29:47 UTC", "RemoteUrl": "https://github.com/bioc/QFeatures", "RemoteRef": "HEAD", "RemoteSha": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-01 12:53:44 UTC", "User": "root" }, "Author": "Laurent Gatto [aut, cre] (ORCID:\n),\nChristophe Vanderaa [aut] (ORCID:\n),\nKarolína Kryštofová [ctb] (ORCID:\n),\nLéopold Guyot [ctb] (ORCID: )", "Maintainer": "Laurent Gatto ", "_user": "bioc", "_type": "src", "_file": "QFeatures_1.23.2.tar.gz", "_fileid": "https://r2.ropensci.org/80dc07311c8685e31540c82d4fe506bb71108da9eae5a19a0b7fdf9b48d33c2f", "_filesize": 1494940, "_sha256": "80dc07311c8685e31540c82d4fe506bb71108da9eae5a19a0b7fdf9b48d33c2f", "_expires": "2027-02-09T14:03:05.000Z", "_created": "2026-11-01T12:53:44.000Z", "_published": "2026-11-01T14:03:07.111Z", "_upstream": "https://github.com/bioc/QFeatures", "_status": "failure", "_maintainer": { "name": "Laurent Gatto", "email": "laurent.gatto@uclouvain.be", "login": "lgatto", "mastodon": "@lgatto@fediscience.org", "orcid": "0000-0002-1520-2268", "description": "Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.\n", "uuid": 384198 }, "_jobs": [ { "job": 124854360677, "time": 210, "config": "bioc-checks", "r": "4.6.2", "check": "WARNING", "artifact": "13084840869" }, { "job": 124854360690, "time": 1057, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "13084508473" }, { "job": 124854360696, "time": 954, "config": "linux-release-x86_64", "r": "4.6.2", "check": "ERROR", "artifact": "13085027157" }, { "job": 124854360716, "time": 1364, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "13085278995" }, { "job": 124854360697, "time": 1519, "config": "macos-release-arm64", "r": "4.6.2", "check": "ERROR", "artifact": "13084679923" }, { "job": 124853171686, "time": 311, "config": "source", "r": "4.6.2", "check": "ERROR", "artifact": "13084461418" }, { "job": 124854360672, "time": 135, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13084034212" }, { "job": 124854360704, "time": 1036, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "13084788135" }, { "job": 124854360776, "time": 1099, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "13085012683" }, { "job": 124854360892, "time": 1521, "config": "windows-release-x86_64", "r": "4.6.2", "check": "ERROR", "artifact": "13085053663" } ], "_bioccheck": { "error": 0, "warning": 2, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664", "_commit": { "id": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "author": "Laurent Gatto ", "committer": "Laurent Gatto ", "message": "add pkgdown topic\n", "time": 1788460187 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "MultiAssayExperiment", "version": ">= 1.33.6", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "BiocGenerics", "version": ">= 0.53.4", "role": "Imports" }, { "package": "ProtGenerics", "version": ">= 1.35.1", "role": "Imports" }, { "package": "AnnotationFilter", "role": "Imports" }, { "package": "lazyeval", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "MsCoreUtils", "version": ">= 1.25.3", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "MsDataHub", "version": ">= 1.11.5", "role": "Suggests" }, { "package": "arrow", "role": "Suggests" }, { "package": "Matrix", "role": "Suggests" }, { "package": "HDF5Array", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "limma", "role": "Suggests" }, { "package": "DT", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" }, { "package": "shinydashboard", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "vsn", "role": "Suggests" }, { "package": "preprocessCore", "role": "Suggests" }, { "package": "matrixStats", "role": "Suggests" }, { "package": "imputeLCMD", "role": "Suggests" }, { "package": "pcaMethods", "role": "Suggests" }, { "package": "impute", "role": "Suggests" }, { "package": "norm", "role": "Suggests" }, { "package": "ComplexHeatmap", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 68, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-12", "n": 1 }, { "week": "2026-15", "n": 6 }, { "week": "2026-16", "n": 6 }, { "week": "2026-17", "n": 2 }, { "week": "2026-18", "n": 15 }, { "week": "2026-36", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.23.2", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.22.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "infrastructure", "massspectrometry", "proteomics", "metabolomics", "bioconductor", "mass-spectrometry" ], "_stars": 30, "_contributors": [ { "user": "lgatto", "count": 788, "uuid": 384198 }, { "user": "cvanderaa", "count": 257, "uuid": 43441105 }, { "user": "leopoldguyot", "count": 48, "uuid": 104364239 }, { "user": "jwokaty", "count": 18, "uuid": 1744257 }, { "user": "nturaga", "count": 8, "uuid": 2746443 }, { "user": "jorainer", "count": 2, "uuid": 5506112 }, { "user": "enessefaayar", "count": 1, "uuid": 92874184 }, { "user": "heriette", "count": 1, "uuid": 63921503 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 6026, "source": "https://www.bioconductor.org/packages/stats/bioc/QFeatures" }, "_devurl": "https://github.com/rformassspectrometry/qfeatures", "_pkgdown": "https://rformassspectrometry.github.io/QFeatures", "_searchresults": 516, "_abi": { "exports": [ { "key": "QFeatures::AssayLink", "hash": "2d176b17a5784fde" }, { "key": "QFeatures::AssayLinks", "hash": "33df3894eb68bd19" }, { "key": "QFeatures::CharacterVariableFilter", "hash": "cb817c77bcecc3b0" }, { "key": "QFeatures::ListorHits", "hash": "75e132a6f61be64a" }, { "key": "QFeatures::NumericVariableFilter", "hash": "f42213c9e414ebb7" }, { "key": "QFeatures::QFeatures", "hash": "c5ba6b7f7b3025c6" }, { "key": "QFeatures::generic:aggcounts", "hash": "5b1922141ecd0f34" }, { "key": "QFeatures::generic:aggregateSamples", "hash": "1d9a7decf406c6a7" }, { "key": "QFeatures::generic:infIsNA", "hash": "83a1c2b2d03dbbfd" }, { "key": "QFeatures::generic:logTransform", "hash": "e7123770a8f1f4be" }, { "key": "QFeatures::generic:nNA", "hash": "fb0a9de7e0603bd4" }, { "key": "QFeatures::generic:scaleTransform", "hash": "18dbec67157bd64d" }, { "key": "QFeatures::generic:subsetByFeature", "hash": "1b8779b5f1f9aa75" }, { "key": "QFeatures::generic:sweep", "hash": "b647ac702cb8b0eb" }, { "key": "QFeatures::generic:zeroIsNA", "hash": "92666aa7a4d51eee" } ], "imports": [ { "key": "AnnotationFilter::AnnotationFilter", "hash": "52853f058a79bf6b" }, { "key": "AnnotationFilter::CharacterFilter", "hash": "5dbf6d6420a4a746" }, { "key": "AnnotationFilter::DoubleFilter", "hash": "98da0bf2434efb64" }, { "key": "BiocGenerics::generic:dims", "hash": "cd9153d77a00c4fc" }, { "key": "BiocGenerics::generic:longForm", "hash": "643bc954f7786374" }, { "key": "BiocGenerics::generic:ncols", "hash": "e5b54146e3e922de" }, { "key": "BiocGenerics::generic:normalize", "hash": "25685ef8e63523de" }, { "key": "BiocGenerics::generic:nrows", "hash": "e7ba915d45582163" }, { "key": "BiocGenerics::generic:updateObject", "hash": "2ce9a5b3171bccbf" }, { "key": "MultiAssayExperiment::MultiAssayExperiment", "hash": "9784902179b4174c" }, { "key": "ProtGenerics::generic:adjacencyMatrix", "hash": "4e944ff608b1392a" }, { "key": "ProtGenerics::generic:aggregateFeatures", "hash": "3a098a8ce3022b76" }, { "key": "ProtGenerics::generic:filterFeatures", "hash": "944b380c0319da0c" }, { "key": "ProtGenerics::generic:filterNA", "hash": "07f5d21090b4140c" }, { "key": "ProtGenerics::generic:impute", "hash": "3c5af613ddcfa31a" }, { "key": "S4Vectors::Annotated", "hash": "9b5b8ee6ad9969f8" }, { "key": "S4Vectors::List", "hash": "90a253151dc8db9b" }, { "key": "S4Vectors::SimpleList", "hash": "5a0b47349341c027" }, { "key": "S4Vectors::Vector", "hash": "09cab0bd77ae353b" }, { "key": "S4Vectors::generic:showAsCell", "hash": "397c9f2858491f2e" }, { "key": "S4Vectors::list_OR_List", "hash": "fcd6e1f6a8d39f9c" }, { "key": "S4Vectors::vector_OR_Vector", "hash": "f3fc18c9f8ff2633" }, { "key": "SummarizedExperiment::generic:rowData", "hash": "dbf7e5cebe2a5326" }, { "key": "SummarizedExperiment::generic:rowData<-", "hash": "43fb357b4763e72f" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/QFeatures.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/rformassspectrometry/qfeatures", "_realowner": "bioc", "_cranurl": false, "_exports": [ "addAssay", "addAssayLink", "addAssayLinkOneToOne", "adjacencyMatrix", "adjacencyMatrix<-", "aggcounts", "aggregateFeatures", "aggregateSamples", "assayLink", "AssayLink", "assayLinks", "AssayLinks", "coerce", "countUniqueFeatures", "createPrecursorId", "dims", "display", "dropEmptyAssays", "expandDataFrame", "filterFeatures", "filterNA", "getQFeaturesType", "impute", "infIsNA", "isDuplicated", "joinAssays", "logTransform", "longForm", "longFormat", "ncols", "nNA", "normalize", "nrows", "QFeatures", "rbindRowData", "readQFeatures", "readQFeaturesFromDIANN", "readSummarizedExperiment", "reduceDataFrame", "removeAssay", "replaceAssay", "replaceColnames", "rowData<-", "rowDataNames", "scaleTransform", "selectRowData", "setQFeaturesType", "show", "subsetByFeature", "sweep", "unfoldDataFrame", "updateObject", "validQFeaturesTypes", "VariableFilter", "zeroIsNA" ], "_datasets": [ { "name": "feat1", "title": "Feature example data", "object": "feat1", "file": "feat1.rda", "class": [ "QFeatures" ], "fields": [], "table": false, "tojson": false }, { "name": "feat2", "title": "Feature example data", "object": "feat2", "file": "feat2.rda", "class": [ "QFeatures" ], "fields": [], "table": false, "tojson": false }, { "name": "feat3", "title": "Example 'QFeatures' object after processing", "object": "feat3", "file": "feat3.rda", "class": [ "QFeatures" ], "fields": [], "table": false, "tojson": false }, { "name": "feat4", "title": "Example 'QFeatures'", "object": "feat4", "file": "feat4.rda", "class": [ "QFeatures" ], "fields": [], "table": false, "tojson": false }, { "name": "ft_na", "title": "Feature example data", "object": "ft_na", "file": "ft_na.rda", "class": [ "QFeatures" ], "fields": [], "table": false, "tojson": false }, { "name": "hlpsms", "title": "hyperLOPIT PSM-level expression data", "object": "hlpsms", "file": "hlpsms.rda", "class": [ "data.frame" ], "fields": [ "X126", "X127C", "X127N", "X128C", "X128N", "X129C", "X129N", "X130C", "X130N", "X131", "Sequence", "ProteinDescriptions", "NbProteins", "ProteinGroupAccessions", "Modifications", "qValue", "PEP", "IonScore", "NbMissedCleavages", "IsolationInterference", "IonInjectTimems", "Intensity", "Charge", "mzDa", "MHDa", "DeltaMassPPM", "RTmin", "markers" ], "rows": 3010, "table": true, "tojson": true }, { "name": "se_na2", "title": "Feature example data", "object": "se_na2", "file": "se_na2.rda", "class": [ "SummarizedExperiment" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "QFeatures-aggregate", "title": "Aggregate sets' quantitative features", "topics": [ "adjacencyMatrix,QFeatures-method", "adjacencyMatrix,SummarizedExperiment-method", "adjacencyMatrix<-", "aggcounts", "aggcounts,SummarizedExperiment-method", "aggregateFeatures", "aggregateFeatures,QFeatures-method", "aggregateFeatures,SummarizedExperiment-method" ] }, { "page": "QFeatures-aggregateSamples", "title": "Aggregate sets' quantitative samples", "topics": [ "aggregateSamples", "aggregateSamples,QFeatures-method", "aggregateSamples,SummarizedExperiment-method" ] }, { "page": "AllGenerics", "title": "Placeholder for generics functions documentation", "topics": [ "AllGenerics" ] }, { "page": "AssayLinks", "title": "Links between Assays", "topics": [ "addAssayLink", "addAssayLinkOneToOne", "AssayLink", "assayLink", "AssayLink-class", "AssayLinks", "assayLinks", "AssayLinks-class", "class:AssayLink", "class:AssayLinks", "show,AssayLink-method", "updateObject,AssayLink-method", "updateObject,AssayLinks-method", "[,AssayLink,character,ANY,ANY-method", "[,AssayLink,character-method", "[,AssayLinks,character-method", "[,AssayLinks,list,ANY,ANY-method" ] }, { "page": "countUniqueFeatures", "title": "Count Unique Features", "topics": [ "countUniqueFeatures" ] }, { "page": "createPrecursorId", "title": "Create precursor identfiers", "topics": [ "createPrecursorId" ] }, { "page": "display", "title": "Interactive MultiAssayExperiment Explorer", "topics": [ "display" ] }, { "page": "feat1", "title": "Feature example data", "topics": [ "feat1", "feat2", "ft_na", "se_na2" ] }, { "page": "feat3", "title": "Example 'QFeatures' object after processing", "topics": [ "feat3" ] }, { "page": "feat4", "title": "Example 'QFeatures'", "topics": [ "feat4" ] }, { "page": "hlpsms", "title": "hyperLOPIT PSM-level expression data", "topics": [ "hlpsms" ] }, { "page": "impute", "title": "Quantitative proteomics data imputation", "topics": [ "impute", "impute,QFeatures-method", "impute,SummarizedExperiment-method" ] }, { "page": "joinAssays", "title": "Join assays in a QFeatures object", "topics": [ "joinAssays" ] }, { "page": "QFeatures-longForm", "title": "Reshape into a long data format", "topics": [ "longForm", "longForm,QFeatures", "longForm,QFeatures-method", "longForm,SummarizedExperiment", "longForm,SummarizedExperiment-method", "longFormat" ] }, { "page": "QFeatures-missing-data", "title": "Managing missing data", "topics": [ "filterNA", "filterNA,QFeatures-method", "filterNA,SummarizedExperiment-method", "infIsNA", "infIsNA,QFeatures,character-method", "infIsNA,QFeatures,integer-method", "infIsNA,QFeatures,missing-method", "infIsNA,QFeatures,numeric-method", "infIsNA,SummarizedExperiment,missing-method", "missing-data", "nNA", "nNA,QFeatures,character-method", "nNA,QFeatures,integer-method", "nNA,QFeatures,missing-method", "nNA,QFeatures,numeric-method", "nNA,SummarizedExperiment,missing-method", "zeroIsNA", "zeroIsNA,QFeatures,character-method", "zeroIsNA,QFeatures,integer-method", "zeroIsNA,QFeatures,missing-method", "zeroIsNA,QFeatures,numeric-method", "zeroIsNA,SummarizedExperiment,missing-method" ] }, { "page": "QFeatures-class", "title": "Quantitative MS QFeatures", "topics": [ "addAssay", "c,QFeatures-method", "class:QFeatures", "coerce,MultiAssayExperiment,QFeatures-method", "coerce-QFeatures", "dims,QFeatures-method", "dropEmptyAssays", "names<-,QFeatures,character-method", "ncols,QFeatures-method", "nrows,QFeatures-method", "plot.QFeatures", "QFeatures", "QFeatures-class", "rbindRowData", "removeAssay", "replaceAssay", "replaceColnames", "rowData,QFeatures-method", "rowData<-,QFeatures,ANY-method", "rowData<-,QFeatures,DataFrameList-method", "rowDataNames", "selectRowData", "show,QFeatures-method", "updateObject,QFeatures-method", "[,QFeatures,ANY,ANY,ANY-method", "[,QFeatures,character,ANY,ANY-method", "[[<-,QFeatures,ANY,ANY-method" ] }, { "page": "QFeatures-filtering", "title": "Filter features based on their rowData", "topics": [ "CharacterVariableFilter", "CharacterVariableFilter-class", "filterFeatures", "filterFeatures,QFeatures,AnnotationFilter-method", "filterFeatures,QFeatures,formula-method", "isDuplicated", "NumericVariableFilter", "NumericVariableFilter-class", "QFeatures-filtering", "VariableFilter" ] }, { "page": "QFeatures-processing", "title": "QFeatures processing", "topics": [ "logTransform", "logTransform,QFeatures-method", "logTransform,SummarizedExperiment-method", "normalize", "normalize,QFeatures-method", "normalize,SummarizedExperiment-method", "normalizeMethods", "QFeatures-processing", "scaleTransform", "scaleTransform,QFeatures-method", "scaleTransform,SummarizedExperiment-method", "sweep", "sweep,QFeatures-method", "sweep,SummarizedExperiment-method" ] }, { "page": "readQFeatures", "title": "QFeatures from tabular data", "topics": [ "readQFeatures", "readQFeatures,data.frame,data.frame", "readQFeatures,data.frame,vector", "readQFeatures,missing,vector", "readSummarizedExperiment" ] }, { "page": "readQFeaturesFromDIANN", "title": "Read DIA-NN output as a QFeatures objects", "topics": [ "readQFeaturesFromDIANN" ] }, { "page": "reduceDataFrame", "title": "Reduces and expands a 'DataFrame'", "topics": [ "expandDataFrame", "reduceDataFrame" ] }, { "page": "QFeatures-subsetBy", "title": "Subset by feature name", "topics": [ "subsetByFeature", "subsetByFeature,QFeatures,character-method" ] }, { "page": "unfoldDataFrame", "title": "Unfold a data frame", "topics": [ "unfoldDataFrame" ] } ], "_pkglogo": "https://github.com/bioc/QFeatures/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/bioc/QFeatures/raw/HEAD/README.md", "_rundeps": [ "abind", "AnnotationFilter", "askpass", "base64enc", "Biobase", "BiocBaseUtils", "BiocGenerics", "bslib", "cachem", "cli", "clue", "cluster", "cpp11", "crosstalk", "curl", "data.table", "DelayedArray", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "igraph", "IRanges", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "MsCoreUtils", "MultiAssayExperiment", "openssl", "otel", "pillar", "pkgconfig", "plotly", "plyr", "promises", "ProtGenerics", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "reshape2", "rlang", "rmarkdown", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "XVector", "yaml" ], "_score": 10.668596335474643, "_indexed": true, "_nocasepkg": "qfeatures", "_universes": [ "bioc", "lgatto", "rformassspectrometry" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.23.2", "date": "2026-11-01T13:00:20.000Z", "distro": "resolute", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/212201ffa4e90511fffe928e12a59f51b226538282c015702afc1d856325450b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.6.2", "os": "linux", "version": "1.23.2", "date": "2026-11-01T13:00:39.000Z", "distro": "resolute", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/1a84a9cf53a38fc63299c7abfd92e84e17fbba87a4dfbdd3f82982982fd50ca2", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.5.3", "os": "mac", "version": "1.23.2", "date": "2026-11-01T13:11:37.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/7a4026a1bf9fd67a656ad886125b03b4eeedbed7de8b9c4e820387b7514ab5cc", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.6.2", "os": "mac", "version": "1.23.2", "date": "2026-11-01T13:09:41.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/dfb0aa276d54928b87445555cf5d7c186fd50094b7349d993e7d4ec6751e8608", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.6.0", "os": "wasm", "version": "1.23.2", "date": "2026-11-01T12:58:44.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/a903c663039ad399da17e0c7a8dfd38adeb3c975df48e7acc8f7605a6210728c", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.7.0", "os": "win", "version": "1.23.2", "date": "2026-11-01T12:57:33.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/8280430c2f114f4fa69f3d40e6e2f2b81f0060f27410e7ea0f8549e2c0358999", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.5.3", "os": "win", "version": "1.23.2", "date": "2026-11-01T12:57:50.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/eb85969ec96bb3832b565335881047ec137b4a69021fd269970017b7328dee12", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" }, { "r": "4.6.2", "os": "win", "version": "1.23.2", "date": "2026-11-01T12:57:35.000Z", "commit": "c4b3bb93ec0b824a52d2f20ea05d5b15a26d7c52", "fileid": "https://r2.ropensci.org/d662fa0d7e2fe93d7841b758a192adea1e4f8ecfac5b4a8e38d35d7130b5f3d7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308277664" } ] }