{ "_id": "6aca17a3fe5cc25786e84954", "Package": "OMICsPCAdata", "Type": "Package", "Title": "Supporting data for package OMICsPCA", "Date": "21/08/2018", "Author": "Subhadeep Das", "Version": "1.31.0", "biocViews": "RepositoryData, TechnologyData, ChIPSeqData, SequencingData,\nExpressionData, ENCODE", "Maintainer": "Subhadeep Das ", "Description": "Supporting data for package OMICsPCA", "License": "GPL-3", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "LazyData": "TRUE", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:32:13 UTC", "RemoteUrl": "https://github.com/bioc/OMICsPCAdata", "RemoteRef": "HEAD", "RemoteSha": "b9536680317264cba789fe3cf011878b032d0271", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:39:49 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "OMICsPCAdata_1.31.0.tar.gz", "_fileid": "https://r2.ropensci.org/466255c5b9bab567953bf3c234ac98c12d962a78ccc8678627e8ebe55e057b2e", "_filesize": 22670111, "_sha256": "466255c5b9bab567953bf3c234ac98c12d962a78ccc8678627e8ebe55e057b2e", "_expires": "2027-01-18T10:46:57.000Z", "_created": "2026-10-10T10:39:49.000Z", "_published": "2026-10-10T10:46:59.905Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045474441", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 3, "warning": 3, "note": 8 }, "_upstream": "https://github.com/bioc/OMICsPCAdata", "_commit": { "id": "b9536680317264cba789fe3cf011878b032d0271", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379533 }, "_maintainer": { "name": "Subhadeep Das", "email": "subhadeep1024@gmail.com", "login": "subhadeep1024", "description": "Biostatistician by profession.\nStatistics, Machine learning and data science enthusiast.", "uuid": 39796710 }, "_distro": "resolute", "_jobs": [ { "job": 114195055536, "time": 142, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11667593979" }, { "job": 114195055530, "time": 235, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11666973455" }, { "job": 114195055532, "time": 243, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11666583927" }, { "job": 114194056995, "time": 351, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667608693" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "MultiAssayExperiment", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "kableExtra", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.31.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.30.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "repositorydata", "technologydata", "chipseqdata", "sequencingdata", "expressiondata", "encode", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 4, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/OMICsPCAdata.html", "extra/readme.html", "extra/readme.md" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "clustered_data", "title": "cluster object", "object": "clustered_data", "class": [ "matrix", "array" ], "fields": [ "Dim.1", "Dim.2", "Dim.3", "Dim.4", "" ], "rows": 300, "table": true, "tojson": true }, { "name": "groupinfo_ext", "title": "An out put of create_group", "object": "groupinfo_ext", "class": [ "data.frame" ], "fields": [ "group" ], "rows": 28770, "table": true, "tojson": true }, { "name": "multi_assay", "title": "Example data sets", "object": "multi_assay", "class": [ "MultiAssayExperiment" ], "fields": [], "table": false, "tojson": false }, { "name": "transcript_details", "title": "details of GENCODE(v 17) TSSs", "object": "transcript_details", "class": [ "data.frame" ], "fields": [ "gene_id", "transcript_id", "gene_type", "gene_status", "gene_name", "transcript_type", "transcript_status", "transcript_name" ], "rows": 194871, "table": true, "tojson": true } ], "_help": [ { "page": "clustered_data", "title": "cluster object", "topics": [ "clustered_data" ] }, { "page": "groupinfo_ext", "title": "An out put of create_group", "topics": [ "groupinfo_ext" ] }, { "page": "multi_assay", "title": "Example data sets", "topics": [ "multi_assay" ] }, { "page": "transcript_details", "title": "details of GENCODE(v 17) TSSs", "topics": [ "transcript_details" ] } ], "_readme": "https://github.com/bioc/OMICsPCAdata/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocBaseUtils", "BiocGenerics", "cli", "cpp11", "DelayedArray", "dplyr", "generics", "GenomicRanges", "glue", "IRanges", "lattice", "lifecycle", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "MultiAssayExperiment", "pillar", "pkgconfig", "purrr", "R6", "rlang", "S4Arrays", "S4Vectors", "Seqinfo", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector" ], "_vignettes": [ { "source": "vignettes.Rmd", "filename": "vignettes.html", "title": "OMICsPCAdata: Supporting data for package OMICsPCA", "author": "Subhadeep Das", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Datasets", "Example of datasets", "CAGE data" ], "created": "2018-08-21 06:27:29", "modified": "2018-09-19 09:17:51", "commits": 6 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "omicspcadata", "_universes": [ "bioc", "subhadeep1024" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.31.0", "date": "2026-10-10T10:44:57.000Z", "distro": "resolute", "commit": "b9536680317264cba789fe3cf011878b032d0271", "fileid": "https://r2.ropensci.org/4a0600aa0e8b89eaa6ffe8f035583bd410a26cfbbfcb94555e1e3a844307ebcc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045474441" }, { "r": "4.6.1", "os": "linux", "version": "1.31.0", "date": "2026-10-10T10:45:09.000Z", "distro": "resolute", "commit": "b9536680317264cba789fe3cf011878b032d0271", "fileid": "https://r2.ropensci.org/bbf0ef4bf877ebfb780500f4b9aed14413560ed45a121e749a516fed0a96e2f9", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045474441" } ] }