{
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  "Package": "MsBackendParquet",
  "Title": "Apache Parquet-based Mass Spectrometry Data Backend",
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  "Description": "Mass spectrometry (MS) data backend for the Spectra\nBioconductor package that stores and retrieves spectra and peak\ndata from on-disk Apache Parquet datasets. Spectra metadata\ntogether with m/z and intensity values are stored in a columnar\nParquet format that supports compression, dictionary encoding\nand Hive-style partitioning. Datasets are written with the\nApache Arrow R bindings and queried with DuckDB. Spectra\nvariables are held in a bounded in-memory index so that\nfiltering and metadata access are fast while peak data remains\non disk.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "URL": "https://github.com/computational-metabolomics/MsBackendParquet",
  "BugReports": "https://github.com/computational-metabolomics/MsBackendParquet/issues",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, Proteomics,\nDataImport",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-10-16 14:02:24 UTC",
  "RemoteUrl": "https://github.com/bioc/MsBackendParquet",
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  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-11-01 14:03:34 UTC",
    "User": "root"
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  "Author": "Ossama Edbali [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0132-8668>),\nRalf Johannes Maria Weber [aut] (ORCID:\n<https://orcid.org/0000-0002-8796-4771>),\nJohannes Rainer [ctb] (ORCID: <https://orcid.org/0000-0002-6977-7147>),\nBioFAIR UK [fnd] (BioFAIR Pathfinder Project)",
  "Maintainer": "Ossama Edbali <o.edbali@bham.ac.uk>",
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  "_expires": "2027-02-09T17:44:47.000Z",
  "_created": "2026-11-01T14:03:34.000Z",
  "_published": "2026-11-01T17:44:49.437Z",
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    "filterDataOrigin",
    "filterMsLevel",
    "filterPrecursorMzRange",
    "filterPrecursorMzValues",
    "filterRt",
    "filterSampleData",
    "intensity",
    "intensity<-",
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    "manifestRuns",
    "MsBackendParquet",
    "mz",
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    "mzMLToParquet",
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    "mzstackError",
    "newManifest",
    "peaksData",
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    "precScanNum",
    "readManifest",
    "reset",
    "runData",
    "runData<-",
    "runVariables",
    "show",
    "smoothed",
    "spectraData",
    "spectraNames",
    "spectraNames<-",
    "supportsSetBackend",
    "tic",
    "uniqueMsLevels",
    "writeManifest"
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        "dropProjection"
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    {
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      "title": "Create a Parquet dataset from raw MS data or a 'Spectra' object",
      "topics": [
        "createMsBackendParquetDataset"
      ]
    },
    {
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      "title": "Build a queryable dataset from mzPeak archives",
      "topics": [
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        "createMzPeakDataset"
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      "title": "Select spectra containing a peak at a given m/z",
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      "title": "Select spectra by their run's sample metadata",
      "topics": [
        "filterSampleData"
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    {
      "page": "MsBackendParquet",
      "title": "Apache Parquet-based MS data backend",
      "topics": [
        "MsBackendParquet-package",
        "$<-,MsBackendParquet-method",
        "backendBpparam,MsBackendParquet-method",
        "backendInitialize,MsBackendParquet-method",
        "backendMerge,MsBackendParquet-method",
        "centroided,MsBackendParquet-method",
        "dataStorage,MsBackendParquet-method",
        "extractByIndex,MsBackendParquet,ANY-method",
        "filterDataOrigin,MsBackendParquet-method",
        "filterMsLevel,MsBackendParquet-method",
        "filterPrecursorMzRange,MsBackendParquet-method",
        "filterPrecursorMzValues,MsBackendParquet-method",
        "filterRt,MsBackendParquet-method",
        "intensity,MsBackendParquet-method",
        "intensity<-,MsBackendParquet-method",
        "MsBackendParquet",
        "MsBackendParquet-class",
        "mz,MsBackendParquet-method",
        "mz<-,MsBackendParquet-method",
        "peaksData,MsBackendParquet-method",
        "peaksVariables,MsBackendParquet-method",
        "precScanNum,MsBackendParquet-method",
        "reset,MsBackendParquet-method",
        "show,MsBackendParquet-method",
        "smoothed,MsBackendParquet-method",
        "spectraData,MsBackendParquet-method",
        "spectraNames,MsBackendParquet-method",
        "spectraNames<-,MsBackendParquet-method",
        "supportsSetBackend,MsBackendParquet-method",
        "tic,MsBackendParquet-method",
        "uniqueMsLevels,MsBackendParquet-method",
        "[,MsBackendParquet-method"
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        "mzstackCondition",
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        "newManifest",
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        "writeManifest"
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