{ "_id": "6a1ac6ac1d7bb097a09dbb31", "Type": "Package", "Package": "MotifPeeker", "Title": "Benchmarking Epigenomic Profiling Methods Using Motif Enrichment", "Version": "1.5.0", "Authors@R": "c( \nperson(given = \"Hiranyamaya\",\nfamily = \"Dash\",\nrole = c(\"cre\", \"aut\"),\nemail = \"hdash.work@gmail.com\",\ncomment = c(ORCID = \"0009-0005-5514-505X\")),\nperson(given = \"Thomas\",\nfamily = \"Roberts\",\nrole = c(\"aut\"),\nemail = \"tomroberts.work15@gmail.com\",\ncomment = c(ORCID = \"0009-0006-6244-8670\")),\nperson(given = \"Maria\",\nfamily = \"Weinert\",\nrole = c(\"aut\"),\nemail = \"m.weinert13@imperial.ac.uk\",\ncomment = c(ORCID = \"0000-0001-6187-1000\")),\nperson(given = \"Nathan\",\nfamily = \"Skene\",\nrole = c(\"aut\"),\nemail = \"nathan.skene@gmail.com\",\ncomment = c(ORCID = \"0000-0002-6807-3180\"))\n)", "Description": "MotifPeeker is used to compare and analyse datasets from\nepigenomic profiling methods with motif enrichment as the key\nbenchmark. The package outputs an HTML report consisting of\nthree sections: (1. General Metrics) Overview of peaks-related\ngeneral metrics for the datasets (FRiP scores, peak widths and\nmotif-summit distances). (2. Known Motif Enrichment Analysis)\nStatistics for the frequency of user-provided motifs enriched\nin the datasets. (3. Motif Discovery Enrichment Analysis)\nStatistics for the frequency of ab-initio discovered motifs\nenriched in the datasets and compared with known motifs.", "License": "GPL (>= 3)", "URL": "https://github.com/neurogenomics/MotifPeeker", "BugReports": "https://github.com/neurogenomics/MotifPeeker/issues", "VignetteBuilder": "knitr", "biocViews": "Epigenetics, Genetics, QualityControl, ChIPSeq,\nMultipleComparison, FunctionalGenomics, MotifDiscovery,\nSequenceMatching, Software, Alignment", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "FALSE", "RoxygenNote": "7.3.3", "SystemRequirements": "MEME Suite (v5.3.3 or above)\n", "Config/Bioconductor/UnsupportedPlatforms": "windows", "Config/pak/sysreqs": "cmake git make libmagick++-dev gsfonts libbz2-dev\nlibgit2-dev libicu-dev liblzma-dev libuv1-dev libxml2-dev\nlibssl-dev libx11-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:04:04 UTC", "RemoteUrl": 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