{
  "_id": "6ae76a05818c9e3ef6dbc14a",
  "Package": "MetaboAnnotation",
  "Title": "Utilities for Annotation of Metabolomics Data",
  "Version": "1.17.0",
  "Description": "High level functions to assist in annotation of\n(metabolomics) data sets. These include functions to perform\nsimple tentative annotations based on mass matching but also\nfunctions to consider m/z and retention times for annotation of\nLC-MS features given that respective reference values are\navailable. In addition, the function provides high-level\nfunctions to simplify matching of LC-MS/MS spectra against\nspectral libraries and objects and functionality to represent\nand manage such matched data.",
  "Authors@R": "c(person(given = \"Michael\", family = \"Witting\",\nrole = c(\"aut\"),\nemail = \"michael.witting@helmholtz-muenchen.de\",\ncomment = c(ORCID = \"0000-0002-1462-4426\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Andrea\", family = \"Vicini\",\nemail = \"andrea.vicini@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9438-6909\")),\nperson(given = \"Carolin\", family = \"Huber\",\nemail = \"carolin-elisabeth.huber@ufz.de\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-9355-8948\")),\nperson(given = \"Philippine\", family = \"Louail\",\nemail = \"philippine.louail@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0009-0007-5429-6846\")),\nperson(given = \"Nir\", family = \"Shachaf\",\nemail = \"nir.shachaf@weizmann.ac.il\",\nrole = \"ctb\"))",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/MetaboAnnotation/issues",
  "URL": "https://github.com/RforMassSpectrometry/MetaboAnnotation",
  "biocViews": "Infrastructure, Metabolomics, MassSpectrometry",
  "Roxygen": "list(markdown=TRUE)",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Collate": "'AllClassUnions.R' 'AllGenerics.R' 'CompAnnotationSource.R'\n'CompDbSource.R' 'Matched.R' 'MatchedSpectra.R'\n'group_standards.R' 'hidden-aliases.R' 'matchFormula.R'\n'matchSpectra.R' 'matchValues.R' 'validateMatchedSpectra.R'",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:45 UTC",
  "RemoteUrl": "https://github.com/bioc/MetaboAnnotation",
  "RemoteRef": "HEAD",
  "RemoteSha": "7f4e9ff0f0f3592be61e68eb4c6933d343535c85",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 13:58:17 UTC",
    "User": "root"
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  "Author": "Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>),\nJohannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>),\nAndrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>),\nCarolin Huber [aut] (ORCID: <https://orcid.org/0000-0002-9355-8948>),\nPhilippine Louail [aut] (ORCID:\n<https://orcid.org/0009-0007-5429-6846>),\nNir Shachaf [ctb]",
  "Maintainer": "Johannes Rainer <Johannes.Rainer@eurac.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "MetaboAnnotation_1.17.0.tar.gz",
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  "_expires": "2027-02-09T16:34:11.000Z",
  "_created": "2026-11-01T13:58:17.000Z",
  "_published": "2026-11-01T16:34:12.858Z",
  "_upstream": "https://github.com/bioc/MetaboAnnotation",
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    "addProcessing",
    "colnames",
    "CompareSpectraParam",
    "CompDbSource",
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    "endoapply",
    "filterMatches",
    "lapply",
    "Mass2MzParam",
    "Mass2MzRtParam",
    "MassBankSource",
    "Matched",
    "matchedData",
    "MatchedSpectra",
    "matches",
    "matchFormula",
    "MatchForwardReverseParam",
    "matchMz",
    "matchSpectra",
    "matchValues",
    "metadata",
    "Mz2MassParam",
    "Mz2MassRtParam",
    "MzParam",
    "MzRtParam",
    "plotSpectraMirror",
    "pruneTarget",
    "query",
    "queryIndex",
    "queryVariables",
    "ScoreThresholdParam",
    "scoreVariables",
    "SelectMatchesParam",
    "setBackend",
    "show",
    "SingleMatchParam",
    "spectraVariables",
    "target",
    "targetIndex",
    "targetVariables",
    "TopRankedMatchesParam",
    "validateMatchedSpectra",
    "ValueParam",
    "whichQuery",
    "whichTarget"
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    {
      "page": "Matched",
      "title": "Representation of generic objects matches",
      "topics": [
        "$,Matched-method",
        "addMatches",
        "addMatches,Matched-method",
        "colnames,Matched-method",
        "endoapply",
        "endoapply,ANY-method",
        "endoapply,Matched-method",
        "filterMatches",
        "filterMatches,Matched,missing-method",
        "filterMatches,Matched,ScoreThresholdParam-method",
        "filterMatches,Matched,SelectMatchesParam-method",
        "filterMatches,Matched,SingleMatchParam-method",
        "filterMatches,Matched,TopRankedMatchesParam-method",
        "lapply,Matched-method",
        "length,Matched-method",
        "Matched",
        "Matched-class",
        "matchedData",
        "matchedData,Matched-method",
        "matches",
        "pruneTarget",
        "query,Matched-method",
        "queryIndex",
        "queryVariables",
        "queryVariables,Matched-method",
        "ScoreThresholdParam",
        "scoreVariables",
        "SelectMatchesParam",
        "show,Matched-method",
        "SingleMatchParam",
        "target",
        "targetIndex",
        "targetVariables",
        "targetVariables,Matched-method",
        "TopRankedMatchesParam",
        "whichQuery",
        "whichTarget",
        "[,Matched,ANY,ANY,ANY-method",
        "[,Matched-method"
      ]
    },
    {
      "page": "CompAnnotationSource",
      "title": "Compound Annotation Sources",
      "topics": [
        "CompAnnotationSource",
        "CompAnnotationSource-class",
        "matchSpectra,Spectra,CompAnnotationSource,Param-method",
        "metadata,CompAnnotationSource-method",
        "show,CompAnnotationSource-method"
      ]
    },
    {
      "page": "CompDbSource",
      "title": "Compound Annotation Sources for 'CompDb' databases",
      "topics": [
        "CompDbSource",
        "CompDbSource-class",
        "MassBankSource",
        "metadata,CompDbSource-method",
        "show,CompDbSource-method"
      ]
    },
    {
      "page": "createStandardMixes",
      "title": "Create Standard Mixes from a Matrix of Standard Compounds",
      "topics": [
        "createStandardMixes"
      ]
    },
    {
      "page": "MatchedSpectra",
      "title": "Representation of Spectra matches",
      "topics": [
        "$,MatchedSpectra-method",
        "addProcessing,MatchedSpectra-method",
        "colnames,MatchedSpectra-method",
        "matchedData,MatchedSpectra-method",
        "MatchedSpectra",
        "MatchedSpectra-class",
        "plotSpectraMirror,MatchedSpectra-method",
        "queryVariables,MatchedSpectra-method",
        "setBackend,MatchedSpectra,MsBackend-method",
        "spectraData,MatchedSpectra-method",
        "spectraVariables,MatchedSpectra-method",
        "targetVariables,MatchedSpectra-method"
      ]
    },
    {
      "page": "matchFormula",
      "title": "Chemical Formula Matching",
      "topics": [
        "matchFormula",
        "matchFormula,character,character-method",
        "matchFormula,character,data.frameOrSimilar-method",
        "matchFormula,data.frameOrSimilar,character-method",
        "matchFormula,data.frameOrSimilar,data.frameOrSimilar-method"
      ]
    },
    {
      "page": "matchSpectra",
      "title": "Spectral matching",
      "topics": [
        "matchSpectra"
      ]
    },
    {
      "page": "CompareSpectraParam",
      "title": "Matching MS Spectra against a reference",
      "topics": [
        "CompareSpectraParam",
        "CompareSpectraParam-class",
        "MatchForwardReverseParam",
        "MatchForwardReverseParam-class",
        "matchSpectra,Spectra,CompDb,Param-method",
        "matchSpectra,Spectra,CompDbSource,Param-method",
        "matchSpectra,Spectra,Spectra,CompareSpectraParam-method",
        "matchSpectra,Spectra,Spectra,MatchForwardReverseParam-method"
      ]
    },
    {
      "page": "validateMatchedSpectra",
      "title": "Validating MatchedSpectra",
      "topics": [
        "validateMatchedSpectra"
      ]
    },
    {
      "page": "matchValues",
      "title": "Matching of numeric values",
      "topics": [
        "Mass2MzParam",
        "Mass2MzRtParam",
        "matchMz",
        "matchValues",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzRtParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassRtParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,MzParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,MzRtParam-method",
        "matchValues,data.frameOrSimilar,data.frameOrSimilar,ValueParam-method",
        "matchValues,data.frameOrSimilar,numeric,Mass2MzParam-method",
        "matchValues,data.frameOrSimilar,numeric,Mz2MassParam-method",
        "matchValues,data.frameOrSimilar,numeric,MzParam-method",
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