{ "_id": "6ac4bd10f511ae58c09a0a63", "Package": "MetID", "Type": "Package", "Title": "Network-based prioritization of putative metabolite IDs", "Version": "1.31.0", "Author": "Zhenzhi Li ", "Maintainer": "Zhenzhi Li ", "URL": "https://github.com/ressomlab/MetID", "Description": "This package uses an innovative network-based approach\nthat will enhance our ability to determine the identities of\nsignificant ions detected by LC-MS.", "License": "Artistic-2.0", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "6.0.1", "VignetteBuilder": "knitr", "biocViews": "AssayDomain, BiologicalQuestion, Infrastructure,\nResearchField, StatisticalMethod, Technology, WorkflowStep,\nNetwork, KEGG", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git libglpk-dev make libharfbuzz-dev libgit2-dev\nlibicu-dev libjpeg-dev libpng-dev librsvg2-dev libtiff-dev\nlibuv1-dev libwebp-dev libxml2-dev libssl-dev libx11-dev\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:48:21 UTC", "RemoteUrl": "https://github.com/bioc/MetID", "RemoteRef": "HEAD", "RemoteSha": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-06 09:09:26 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "MetID_1.31.0.tar.gz", "_fileid": "https://r2.ropensci.org/4fc1627b2ab78c3df2fbdfab938069c965f69f2cfbda886cfcd5eb3bafdec3e0", "_filesize": 1678940, "_sha256": "4fc1627b2ab78c3df2fbdfab938069c965f69f2cfbda886cfcd5eb3bafdec3e0", "_expires": "2027-01-14T09:19:10.000Z", "_created": "2026-10-06T09:09:26.000Z", "_published": "2026-10-06T09:19:12.212Z", "_bioccheck": { "error": 1, "warning": 0, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338", "_status": "success", "_upstream": "https://github.com/bioc/MetID", "_commit": { "id": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380501 }, "_maintainer": { "name": "Zhenzhi Li", "email": "zzrickli@gmail.com", "login": "rzzli", "description": "Bioinformatics PhD student", "uuid": 31550137 }, "_distro": "resolute", "_jobs": [ { "job": 112194656551, "time": 152, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11400853892" }, { "job": 112194656808, "time": 340, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11401427442" }, { "job": 112194656607, "time": 542, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11401696826" }, { "job": 112194656821, "time": 114, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11400793778" }, { "job": 112194656692, "time": 137, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11401352076" }, { "job": 112193089428, "time": 243, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11401157419" }, { "job": 112194656739, "time": 138, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11401506502" }, { "job": 112194656727, "time": 148, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11400863835" }, { "job": 112194656898, "time": 150, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11400863847" }, { "job": 112194656841, "time": 143, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11401337071" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "utils", "version": ">= 3.3.1", "role": "Imports" }, { "package": "stats", "version": ">= 3.4.2", "role": "Imports" }, { "package": "devtools", "version": ">= 1.13.0", "role": "Imports" }, { "package": "stringr", "version": ">= 1.3.0", "role": "Imports" }, { "package": "Matrix", "version": ">= 1.2-12", "role": "Imports" }, { "package": "igraph", "version": ">= 1.2.1", "role": "Imports" }, { "package": "ChemmineR", "version": ">= 2.30.2", "role": "Imports" }, { "package": "knitr", "version": ">= 1.19", "role": "Suggests" }, { "package": "rmarkdown", "version": ">= 1.8", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.31.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.30.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "assaydomain", "biologicalquestion", "infrastructure", "researchfield", "statisticalmethod", "technology", "workflowstep", "network", "kegg" ], "_stars": 1, "_contributors": [ { "user": "ressomlab", "count": 2, "uuid": 38534764 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 473, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 387, "source": "https://www.bioconductor.org/packages/stats/bioc/MetID" }, "_mentions": 5, "_devurl": "https://github.com/ressomlab/metid", "_searchresults": 118, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MetID.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/ressomlab/metid", "_realowner": "bioc", "_cranurl": false, "_exports": [ "get_scores_for_LC_MS" ], "_datasets": [ { "name": "demo1", "title": "Example of input dataset, in which colnames does not meet requirement.", "object": "demo1", "class": [ "data.frame" ], "fields": [ "Query.Mass", "Name", "Formula", "Exact.Mass", "PubChem.CID", "KEGG.ID" ], "rows": 20, "table": true, "tojson": true }, { "name": "demo2", "title": "Example of input dataset, in which colnames does not meet requirement.", "object": "demo2", "class": [ "data.frame" ], "fields": [ "Query.Mass", "Name", "Formula", "Exact.Mass", "PubChem.CID", "KEGG.ID" ], "rows": 3592, "table": true, "tojson": true }, { "name": "InchiKey", "title": "Inchikey database.", "object": "InchiKey", "class": [ "data.frame" ], "fields": [ "CID", "InchiKey" ], "rows": 101494, "table": true, "tojson": true }, { "name": "kegg_network", "title": "Pairs of kegg network.", "object": "kegg_network", "class": [ "data.frame" ], "fields": [ "r1", "r2" ], "rows": 57070, "table": true, "tojson": true } ], "_help": [ { "page": "demo1", "title": "Example of input dataset, in which colnames does not meet requirement.", "topics": [ "demo1" ] }, { "page": "demo2", "title": "Example of input dataset, in which colnames does not meet requirement.", "topics": [ "demo2" ] }, { "page": "get_cleaned", "title": "Preprocess input file.", "topics": [ "get_cleaned" ] }, { "page": "get_kegg_network", "title": "Build network between identifications based on kegg network database.", "topics": [ "get_kegg_network" ] }, { "page": "get_scores_for_LC_MS", "title": "Get scores for metabolite putative IDs by LC-MS .", "topics": [ "get_scores_for_LC_MS" ] }, { "page": "get_tani_network", "title": "Build network between identifications based on tanimoto score.", "topics": [ "get_tani_network" ] }, { "page": "InchiKey", "title": "Inchikey database.", "topics": [ "InchiKey" ] }, { "page": "kegg_network", "title": "Pairs of kegg network.", "topics": [ "kegg_network" ] }, { "page": "MetID", "title": "MetID: A package for Network-based prioritization of putative metabolite IDs.", "topics": [ "MetID-package", "MetID" ] } ], "_readme": "https://github.com/bioc/MetID/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "BH", "BiocGenerics", "bitops", "brew", "brio", "bslib", "cachem", "callr", "ChemmineR", "cli", "clipr", "commonmark", "cpp11", "crayon", "credentials", "crosstalk", "curl", "DBI", "desc", "devtools", "diffobj", "digest", "downlit", "DT", "ellipsis", "evaluate", "fansi", "farver", "fastmap", "fontawesome", "fs", "generics", "gert", "ggplot2", "gitcreds", "glue", "gridExtra", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr2", "igraph", "ini", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "miniUI", "openssl", "otel", "pak", "pillar", "pkgbuild", "pkgconfig", "pkgdown", "pkgload", "png", "praise", "prettyunits", "processx", "profvis", "promises", "ps", "purrr", "R6", "ragg", "rappdirs", "rcmdcheck", "RColorBrewer", "Rcpp", "RCurl", "rdtools", "rjson", "rlang", "rmarkdown", "roxygen2", "rprojroot", "rstudioapi", "rsvg", "rversions", "S7", "sass", "scales", "sessioninfo", "shiny", "sourcetools", "stringi", "stringr", "sys", "systemfonts", "testthat", "textshaping", "tibble", "tinytex", "urlchecker", "usethis", "utf8", "vctrs", "viridisLite", "waldo", "whisker", "withr", "xfun", "xml2", "xopen", "xtable", "yaml", "zip" ], "_vignettes": [ { "source": "Introduction_to_MetID.Rmd", "filename": "Introduction_to_MetID.html", "title": "Introduction to MetID", "author": "Xuchen Wang", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Example", "Load MetID package first.", "Load demo1 dataset.", "Check the form of demo1 dataset.", "Change colnames of demo1.", "Other data sources" ], "created": "2018-07-17 14:56:21", "modified": "2018-07-17 14:56:21", "commits": 1 } ], "_score": 5.770852011642145, "_indexed": true, "_nocasepkg": "metid", "_universes": [ "bioc", "rzzli", "ressomlab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.31.0", "date": "2026-10-06T09:14:26.000Z", "distro": "resolute", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/b2132cdcdd83df41be2c833f95e9149b469916bd3905a4daf04c06f520b4cb19", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.6.1", "os": "linux", "version": "1.31.0", "date": "2026-10-06T09:17:57.000Z", "distro": "resolute", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/e8ad85c6ef9b12122787d5f075ee80d8d3de4836d9682f43246839b3109b830b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.5.3", "os": "mac", "version": "1.31.0", "date": "2026-10-06T09:11:04.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/e003f65791306652f97853fe82825b5720596950586f28dd4f6b9f34fbdf2726", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.6.1", "os": "mac", "version": "1.31.0", "date": "2026-10-06T09:11:17.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/e5531df8e96610c36c8223052d5e4d242b2b8e2ac577118df82473179955cf24", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.6.0", "os": "wasm", "version": "1.31.0", "date": "2026-10-06T09:12:01.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/5d5c0a4ef534c8240484026204d2b9b0e08c97946cb7cf071b6083cf0b83f36e", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.7.0", "os": "win", "version": "1.31.0", "date": "2026-10-06T09:10:56.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/5649b82be8c5ec7f915f208d92db1550348595d642787324f18878a4d661555d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.5.3", "os": "win", "version": "1.31.0", "date": "2026-10-06T09:11:10.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/acefec90ac2f3b529638c7000b9708c309bcc8fc32c03244fd1f0d7370aaf3af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" }, { "r": "4.6.1", "os": "win", "version": "1.31.0", "date": "2026-10-06T09:10:58.000Z", "commit": "131a974bb2ebb552472e09d0122a28b59ed2bd18", "fileid": "https://r2.ropensci.org/fe3ca0fe718494551215d53fc0737fd73fdc07831cff86d2df96f1ec76b8fcd3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37440541338" } ] }