{ "_id": "6a104754acfb0bcc41c9eef3", "Package": "MassArray", "Type": "Package", "Title": "Analytical Tools for MassArray Data", "Version": "1.65.0", "Date": "2019-03-18", "Author": "Reid F. Thompson , John M. Greally\n", "Maintainer": "Reid F. Thompson ", "Description": "This package is designed for the import, quality control,\nanalysis, and visualization of methylation data generated using\nSequenom's MassArray platform. The tools herein contain a\nhighly detailed amplicon prediction for optimal assay design.\nAlso included are quality control measures of data, such as\nprimer dimer and bisulfite conversion efficiency estimation.\nMethylation data are calculated using the same algorithms\ncontained in the EpiTyper software package. Additionally,\nautomatic SNP-detection can be used to flag potentially\nconfounded data from specific CG sites. Visualization includes\nbarplots of methylation data as well as UCSC Genome\nBrowser-compatible BED tracks. Multiple assays can be\npositionally combined for integrated analysis.", "License": "GPL (>=2)", "biocViews": "ImmunoOncology, DNAMethylation, SNP, MassSpectrometry,\nGenetics, DataImport, Visualization", "LazyData": "yes", "LazyLoad": "yes", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:34:27 UTC", "RemoteUrl": "https://github.com/bioc/MassArray", "RemoteRef": "HEAD", "RemoteSha": "36250c9022e8f0c8f08ed38af7c5a2a194847d69", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-10 09:33:16 UTC", "User": "root" }, "MD5sum": "dbf07d1c9123275b01c3421960c51c02", "_user": "bioc", "_type": "src", "_file": "MassArray_1.65.0.tar.gz", "_fileid": "29df1576d6a6fb8c00d3939eee189ca93df9a5e9781959ef466d3236f17a7f9f", "_filesize": 466891, "_sha256": "29df1576d6a6fb8c00d3939eee189ca93df9a5e9781959ef466d3236f17a7f9f", "_created": "2026-05-10T09:33:16.000Z", "_published": "2026-05-22T12:08:52.601Z", "_jobs": [ { "job": 77376464041, "time": 132, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "6902698589" }, { "job": 77376463804, "time": 163, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "6902701843" }, { "job": 77376464195, "time": 182, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6902704225" }, { "job": 77376463782, "time": 74, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "6902774389" }, { "job": 77376463681, "time": 89, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "6902771714" }, { "job": 77376463349, "time": 155, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6902684390" }, { "job": 77376463328, "time": 76, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7160107079" }, { "job": 77376463740, "time": 86, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "6902693949" }, { "job": 77376464086, "time": 73, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "6902692491" }, { "job": 77376463702, "time": 82, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "6902693237" } ], "_bioccheck": { "error": 1, "warning": 4, "note": 15 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/25625249223", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/MassArray", "_commit": { "id": "36250c9022e8f0c8f08ed38af7c5a2a194847d69", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379667 }, "_maintainer": { "name": "Reid F. Thompson", "email": "reid.thompson@gmail.com", "login": "reidt03", "uuid": 21960505 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.65.0", "bioc": "3.24" }, { "branch": "release", "version": "1.64.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "dnamethylation", "snp", "massspectrometry", "genetics", "dataimport", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic 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"topics": [ "combine,MassArrayData,MassArrayData-method", "combine,MassArrayData,missing-method", "combine-methods" ] }, { "page": "convControl", "title": "Conversion control", "topics": [ "convControl" ] }, { "page": "countCGs", "title": "Count number of CGs", "topics": [ "countCGs" ] }, { "page": "createWiggle", "title": "Create wiggle track", "topics": [ "createWiggle" ] }, { "page": "estimatePrimerDimer", "title": "Estimate Primer Dimers", "topics": [ "estimatePrimerDimer" ] }, { "page": "evaluateSNPs", "title": "Evaluate SNPs", "topics": [ "evaluateSNPs" ] }, { "page": "expandSequence", "title": "Expand nucleotide sequence", "topics": [ "expandSequence" ] }, { "page": "findCollisions", "title": "Find peak collisions", "topics": [ "findCollisions" ] }, { "page": "findFragments", "title": "Find fragments", "topics": [ "findFragments" ] }, { "page": "findPeaks", "title": "Find peaks", "topics": [ "findPeaks" ] }, { "page": "identifySNPs", "title": "Identify SNPs", "topics": [ 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