{
  "_id": "6a4942d918cdde069385e862",
  "Package": "MBCB",
  "Version": "1.67.0",
  "Date": "2010-05-10",
  "Title": "MBCB (Model-based Background Correction for Beadarray)",
  "Description": "This package provides a model-based background correction\nmethod, which incorporates the negative control beads to\npre-process Illumina BeadArray data.",
  "Author": "Yang Xie <Yang.Xie@UTSouthwestern.edu>",
  "Maintainer": "Bo Yao <Bo.Yao@UTSouthwestern.edu>",
  "License": "GPL (>=2)",
  "URL": "https://qbrc.swmed.edu/",
  "biocViews": "Microarray, Preprocessing",
  "Config/pak/sysreqs": "tcl tk tk-dev tk-table",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:34:44 UTC",
  "RemoteUrl": "https://github.com/bioc/MBCB",
  "RemoteRef": "HEAD",
  "RemoteSha": "e4027a7946e27ae293882eb257e0f732aed44935",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 11:11:50 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "MBCB_1.67.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/dea0b9eecc3c861cd7994e93c37f1b4e53cdfd1b64619b02f3f5edf1bf6e068f",
  "_filesize": 439214,
  "_sha256": "dea0b9eecc3c861cd7994e93c37f1b4e53cdfd1b64619b02f3f5edf1bf6e068f",
  "_expires": "2026-10-12T17:28:55.000Z",
  "_created": "2026-07-04T11:11:50.000Z",
  "_published": "2026-07-04T17:28:57.152Z",
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 15
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503",
  "_status": "success",
  "_upstream": "https://github.com/bioc/MBCB",
  "_commit": {
    "id": "e4027a7946e27ae293882eb257e0f732aed44935",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379684
  },
  "_maintainer": {
    "name": "Bo Yao",
    "email": "bo.yao@utsouthwestern.edu",
    "login": "burgler",
    "description": "",
    "uuid": 7306848
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85152271726,
      "time": 139,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8081179018"
    },
    {
      "job": 85152271750,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8081178612"
    },
    {
      "job": 85152271740,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8081178452"
    },
    {
      "job": 85152271693,
      "time": 93,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8081174108"
    },
    {
      "job": 85152271869,
      "time": 94,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8081174354"
    },
    {
      "job": 85152271738,
      "time": 212,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8081163356"
    },
    {
      "job": 85152271839,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8081174806"
    },
    {
      "job": 85152271795,
      "time": 69,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8081171603"
    },
    {
      "job": 85152271824,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8081171644"
    },
    {
      "job": 85152271875,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8081171688"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.9.0",
      "role": "Depends"
    },
    {
      "package": "tcltk",
      "role": "Depends"
    },
    {
      "package": "tcltk2",
      "role": "Depends"
    },
    {
      "package": "preprocessCore",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.67.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.66.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "preprocessing"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 2,
  "_searchresults": 13,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MBCB.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "bg.mcmc",
    "bg.rma",
    "mbcb.correct",
    "mbcb.gui",
    "mbcb.main",
    "mbcb.parseFile"
  ],
  "_datasets": [
    {
      "name": "expressionSignal",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "object": "MBCBExpressionData",
      "file": "MBCBExpressionData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "g.1",
        "g.2",
        "g.3",
        "g.4"
      ],
      "rows": 1033,
      "table": true,
      "tojson": true
    },
    {
      "name": "negativeControl",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "object": "MBCBExpressionData",
      "file": "MBCBExpressionData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "x.1",
        "x.2",
        "x.3"
      ],
      "rows": 1655,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bg.mcmc",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "topics": [
        "bg.mcmc"
      ]
    },
    {
      "page": "bg.rma",
      "title": "MBCB - Robust Multi-Array Average Background Correction for Illumina Beadarray",
      "topics": [
        "bg.rma"
      ]
    },
    {
      "page": "mbcb.correct",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.correct"
      ]
    },
    {
      "page": "mbcb.gui",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.gui"
      ]
    },
    {
      "page": "mbcb.main",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.main"
      ]
    },
    {
      "page": "mbcb.parseFile",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.parseFile"
      ]
    },
    {
      "page": "MBCBExpressionData",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "topics": [
        "expressionSignal",
        "MBCBExpressionData",
        "negativeControl"
      ]
    },
    {
      "page": "printMBCBOutput",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "printMBCBOutput"
      ]
    }
  ],
  "_rundeps": [
    "preprocessCore",
    "tcltk2"
  ],
  "_vignettes": [
    {
      "source": "MBCB.Rnw",
      "filename": "MBCB.pdf",
      "title": "MBCB",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:13:55",
      "modified": "2013-11-01 20:13:55",
      "commits": 1
    }
  ],
  "_score": 3.7160033436347994,
  "_indexed": true,
  "_nocasepkg": "mbcb",
  "_universes": [
    "bioc",
    "burgler"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.67.0",
      "date": "2026-07-04T11:14:10.000Z",
      "distro": "resolute",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/674681a4f130a5edf1b085e24c8be9ec5bd8472caf4cd8c5d781f05de0f07254",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.67.0",
      "date": "2026-07-04T11:14:09.000Z",
      "distro": "resolute",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/26bf99cf2bd7933488547cba61e1a3846047b90228c57810c8d95fd07251e65e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:29.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/ee9aeee3e7acec188daa3ef077418e0708c41b33ec0f86fb23400070229daee5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:30.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/cf5eac12c162c55150d498d8805d9ad1389f2d041a13b8a4be9986d7f4463b10",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:46.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/4dd2bee49379d0d433ec442bd1954b866614ced6391dcb2d07ab40b54825b62d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:00.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/ffa0d5c81f7d706668b35c6aa0f022e38a84c05846da60db7f8da05682a7223a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:00.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/4f86652c57b0ab242b912c2406185c8d2c1f8e8f7aef93e3a50f7a7851dd224a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-07-04T11:13:00.000Z",
      "commit": "e4027a7946e27ae293882eb257e0f732aed44935",
      "fileid": "https://r2.ropensci.org/e742affc66cb4047903a2ebd90356d25f52d20c057a3e42f9ef3e9685ab4b155",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28704288503"
    }
  ]
}