{
  "_id": "6a49961e74ff1be5edd78d2e",
  "Package": "MBAmethyl",
  "Type": "Package",
  "Title": "Model-based analysis of DNA methylation data",
  "Version": "1.47.0",
  "Date": "2014-10-03",
  "Author": "Tao Wang, Mengjie Chen",
  "Maintainer": "Tao Wang <tao.wang.tw376@yale.edu>",
  "Description": "This package provides a function for reconstructing DNA\nmethylation values from raw measurements. It iteratively\nimplements the group fused lars to smooth related-by-location\nmethylation values and the constrained least squares to remove\nprobe affinity effect across multiple sequences.",
  "License": "Artistic-2.0",
  "biocViews": "DNAMethylation, MethylationArray",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:08 UTC",
  "RemoteUrl": "https://github.com/bioc/MBAmethyl",
  "RemoteRef": "HEAD",
  "RemoteSha": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 23:20:00 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "MBAmethyl_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e0bafce1944963a6061d1fbb8d0a05c8009a8d47189266ff3b7a245bcad8b53e",
  "_filesize": 177099,
  "_sha256": "e0bafce1944963a6061d1fbb8d0a05c8009a8d47189266ff3b7a245bcad8b53e",
  "_expires": "2026-10-12T23:24:12.000Z",
  "_created": "2026-07-04T23:20:00.000Z",
  "_published": "2026-07-04T23:24:14.438Z",
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 8
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189",
  "_status": "success",
  "_upstream": "https://github.com/bioc/MBAmethyl",
  "_commit": {
    "id": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380008
  },
  "_maintainer": {
    "name": "Tao Wang",
    "email": "tao.wang.tw376@yale.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85175191465,
      "time": 153,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8086339248"
    },
    {
      "job": 85175191452,
      "time": 157,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8086339728"
    },
    {
      "job": 85175191447,
      "time": 221,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8086346403"
    },
    {
      "job": 85175191444,
      "time": 62,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8086339867"
    },
    {
      "job": 85175191450,
      "time": 77,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8086341961"
    },
    {
      "job": 85175042316,
      "time": 153,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8086322528"
    },
    {
      "job": 85175191451,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8086333750"
    },
    {
      "job": 85175191468,
      "time": 55,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8086328843"
    },
    {
      "job": 85175191460,
      "time": 62,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8086329676"
    },
    {
      "job": 85175191462,
      "time": 58,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8086329203"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15",
      "role": "Depends"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dnamethylation",
    "methylationarray"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MBAmethyl.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "MBAmethyl"
  ],
  "_help": [
    {
      "page": "MBAmethyl-package",
      "title": "Model-based analysis of DNA methylation data",
      "topics": [
        "MBAmethyl-package"
      ]
    },
    {
      "page": "MBAmethyl",
      "title": "Model-based analysis of DNA methylation data",
      "topics": [
        "MBAmethyl"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "MBAmethyl.Rnw",
      "filename": "MBAmethyl.pdf",
      "title": "MBAmethyl Vignette",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Overview of capabilities"
      ],
      "created": "2014-10-09 22:58:27",
      "modified": "2014-10-09 22:58:27",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "mbamethyl",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-04T23:22:42.000Z",
      "distro": "resolute",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/be7d0143ca05cb802f3a088a0ee45794a17fda9f4d5e31212a2f0b29b7c9a526",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-04T23:23:47.000Z",
      "distro": "resolute",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/f086c4d6af15e16a5cc176f0a1574999f98daddad3220931c40b580cd4eb5ee5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-04T23:22:47.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/38b9de3a399389458ad9ed3f0d63be816ac5cc939706031851436ae0a7467c0b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-04T23:23:06.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/b9656833663f4494558803b300b81fb57d4df2ef4ff3f9a291e55a892adcc691",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-04T23:21:53.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/d1333c00cf23fbea48cd2a6042312bacb0c1fe968e40ff8156b25768ffa74e93",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T23:20:57.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/d2cfff7997617ba07ce9e9aed1bc184d4b0f7d82e6ff60379e42979e68a2a1d0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T23:21:05.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/5a7bdf2b3304293c11a2963442e09953023546f13274d8f34a1aa1728b4a4f31",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-04T23:21:00.000Z",
      "commit": "0cf2026b8bd62c87c5c7d54994a52e175d8c93fe",
      "fileid": "https://r2.ropensci.org/57e1c9b14c6fdf4b13e155d687c73813dca14e33a6d2225404c49ef50cee1536",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722815189"
    }
  ]
}