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The package features\nfunctions to perform exploratory analyses of sample grouping,\nidentify differentially expressed genes in hybrids relative to\ntheir progenitors, classify genes in expression categories (N =\n12) and classes (N = 5), and perform functional analyses. We\nalso provide users with graphical functions for the seamless\ncreation of publication-ready figures that are commonly used in\nthe literature.", "License": "GPL-3", "URL": "https://github.com/almeidasilvaf/HybridExpress", "BugReports": "https://support.bioconductor.org/tag/HybridExpress", "biocViews": "Software, FunctionalGenomics, GeneExpression,\nTranscriptomics, RNASeq, Classification, DifferentialExpression", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "LazyData": "false", "Config/pak/sysreqs": "libpng-dev perl zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:02:38 UTC", "RemoteUrl": "https://github.com/bioc/HybridExpress", "RemoteRef": "HEAD", "RemoteSha": "43455b3891942debecc2da46fd2422c406b0ee7a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:01:02 UTC", "User": "root" }, "Author": "Fabricio Almeida-Silva [aut, cre] (ORCID:\n),\nLucas Prost-Boxoen [aut] (ORCID:\n),\nYves Van de Peer [aut] (ORCID: )", "Maintainer": "Fabricio Almeida-Silva ", "MD5sum": "2e5f62afa26035f5dbdabea57ed993c3", "_user": "bioc", "_type": "src", "_file": "HybridExpress_1.9.0.tar.gz", "_fileid": "fc5d7fdcd110b24a29bf65a6d975f63bbca5eee280d610b581211c161ee0fc51", "_filesize": 3263589, "_sha256": "fc5d7fdcd110b24a29bf65a6d975f63bbca5eee280d610b581211c161ee0fc51", "_created": "2026-05-30T08:01:02.000Z", "_published": "2026-05-30T11:36:03.538Z", "_jobs": [ { "job": 78635222010, "time": 181, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306689314" }, { "job": 78635222017, "time": 375, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7306707870" }, { "job": 78635222015, "time": 348, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7306705264" }, { "job": 78635222014, "time": 193, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7307884940" }, { "job": 78635222038, "time": 201, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7307885951" }, { "job": 78634966602, "time": 283, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306671849" }, { "job": 78635222008, "time": 130, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306684444" }, { "job": 78635222045, "time": 287, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7306699339" }, { "job": 78635222063, "time": 295, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7306700338" }, { "job": 78635222036, "time": 269, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7306697596" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 7 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678624556", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/HybridExpress", "_commit": { "id": "43455b3891942debecc2da46fd2422c406b0ee7a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381358 }, "_maintainer": { "name": "Fabricio Almeida-Silva", "email": "fabricio_almeidasilva@hotmail.com", "login": "almeidasilvaf", "bluesky": "@almeidasilvaf.bsky.social", "description": "Bioinformatics. 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