{ "_id": "6aca1963fe5cc25786e84ac4", "Package": "HumanRetinaLRSData", "Type": "Package", "Title": "Long-read RNA-seq gene count data from human retinal organoids", "Version": "1.1.0", "Authors@R": "c(\nperson(\"Sowmya\", \"Parthiban\", email = \"sparthi1@jhu.edu\", role = c(\"aut\", \"cre\")))", "Description": "Dataset package containing gene and isoform count\nmatrices, and sample metadata for long-read direct cDNA\nsequencing of human retinal organoids, 2D retinal ganglion cell\n(RGC) cultures, and flowthrough fractions from H9 and EP1 iPSC\ncell lines. Data were generated using Oxford Nanopore\nTechnology (ONT) direct cDNA sequencing and mapped to the\nGRCh38 reference genome (GENCODE v46 annotation). The package\nprovides accessor functions returning SummarizedExperiment\nobjects for gene-level counts, isoform-level counts, and a\nmatrix of allele-specific expression (ASE) gene counts. Data\nfiles are stored in flat CSV format in an Open Science\nFramework (OSF) repository and cached locally via\nBiocFileCache.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "URL": "https://github.com/sparthib/HumanRetinaLrsData", "BugReports": "https://github.com/sparthib/HumanRetinaLrsData/issues", "biocViews": "ExperimentData, RNASeqData, ExpressionData,\nHomo_sapiens_Data, CellCulture", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:38:23 UTC", "RemoteUrl": "https://github.com/bioc/HumanRetinaLRSData", "RemoteRef": "HEAD", "RemoteSha": "85415f64fb013a1ce19ad4c2c8d9879886e8af1c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:47:04 UTC", "User": "root" }, "Author": "Sowmya Parthiban [aut, cre]", "Maintainer": "Sowmya Parthiban ", "_user": "bioc", "_type": "src", "_file": 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