{ "_id": "6a1acda51d7bb097a09df4d0", "Package": "HiCExperiment", "Title": "Bioconductor class for interacting with Hi-C files in R", "Version": "1.13.0", "Date": "2025-07-22", "Authors@R": "c(person(given = \"Jacques\",\nfamily = \"Serizay\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jacquesserizay@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4295-0624\")))", "Description": "R generic interface to Hi-C contact matrices in\n`.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other\nHi-C processed file formats. Contact matrices can be partially\nparsed using a random access method, allowing a\nmemory-efficient representation of Hi-C data in R. The\n`HiCExperiment` class stores the Hi-C contacts parsed from\nlocal contact matrix files. `HiCExperiment` instances can be\nfurther investigated in R using the `HiContacts` analysis\npackage.", "License": "MIT + file LICENSE", "URL": "https://github.com/js2264/HiCExperiment", "BugReports": "https://github.com/js2264/HiCExperiment/issues", "biocViews": "HiC, DNA3DStructure, DataImport", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "LazyData": "false", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "Config/testthat/edition": "3", "Collate": "'HiCExperiment-class.R' 'AggrHiCExperiment-class.R'\n'AllGenerics.R' 'HiCExperiment-methods.R'\n'AggrHiCExperiment-methods.R' 'PairsFile-class.R'\n'ContactsFile-class.R' 'ContactsFile-methods.R'\n'CoolFile-class.R' 'CoolFile-methods.R' 'HicFile-class.R'\n'HicFile-methods.R' 'HicproFile-class.R' 'HicproFile-methods.R'\n'PairsFile-methods.R' 'import-methods.R' 'available.R' 'bin.R'\n'checks.R' 'coerce.R' 'data.R' 'export-methods.R' 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