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  "Title": "S4 Class for Quantitative Data and Associated Networks",
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  "Date": "2026-03-01",
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  "Description": "GraphExperiment provides users and developers with an S4\nclass that extends `SingleCellExperiment` by offering\ninfrastructure to store and retrieve networks (`igraph`\nobjects) representing how assay features and/or observations\nare associated with each other. The class was designed to store\nnetworks inferred from high-dimensional quantitative data, with\nfeature-feature networks including gene coexpression networks\n(GCNs), gene regulatory networks (GRNs), and co-abundance\nnetworks (from proteomics and metabolomics), and\nobservation-observation network including cell-cell distances,\nspecies-species relationships, and sample-sample similarities.",
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        "coerce,SummarizedExperiment,GraphExperiment-method",
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