{ "_id": "6ae747fb1e2c7b3a4f52ff24", "Package": "GenomicFeatures", "Title": "Query the gene models of a given organism/assembly", "Description": "Extract the genomic locations of genes, transcripts,\nexons, introns, and CDS, for the gene models stored in a TxDb\nobject. A TxDb object is a small database that contains the\ngene models of a given organism/assembly. Bioconductor provides\na small collection of TxDb objects in the form of\nready-to-install TxDb packages for the most commonly studied\norganisms. Additionally, the user can easily make a TxDb object\n(or package) for the organism/assembly of their choice by using\nthe tools from the txdbmaker package.", "biocViews": "Genetics, Infrastructure, Annotation, Sequencing,\nGenomeAnnotation", "URL": "https://bioconductor.org/packages/GenomicFeatures", "BugReports": "https://github.com/Bioconductor/GenomicFeatures/issues", "Version": "1.65.0", "License": "Artistic-2.0", "Encoding": "UTF-8", "Authors@R": "c(\nperson(\"H.\", \"Pagès\", role=c(\"aut\", \"cre\"),\nemail=\"hpages.on.github@gmail.com\"),\nperson(\"M.\", \"Carlson\", role=\"aut\"),\nperson(\"P.\", \"Aboyoun\", role=\"aut\"),\nperson(\"S.\", \"Falcon\", role=\"aut\"),\nperson(\"M.\", \"Morgan\", role=\"aut\"),\nperson(\"D.\", \"Sarkar\", role=\"aut\"),\nperson(\"M.\", \"Lawrence\", role=\"aut\"),\nperson(\"V.\", \"Obenchain\", role=\"aut\"),\nperson(\"S.\", \"Arora\", role=\"ctb\"),\nperson(\"J.\", \"MacDonald\", role=\"ctb\"),\nperson(\"M.\", \"Ramos\", role=\"ctb\"),\nperson(\"S.\", \"Saini\", role=\"ctb\"),\nperson(\"P.\", \"Shannon\", role=\"ctb\"),\nperson(\"L.\", \"Shepherd\", role=\"ctb\"),\nperson(\"D.\", \"Tenenbaum\", role=\"ctb\"),\nperson(\"D.\", \"Van Twisk\", role=\"ctb\"))", "VignetteBuilder": "knitr", "Collate": "utils.R TxDb-schema.R TxDb-SELECT-helpers.R TxDb-class.R\nFeatureDb-class.R mapIdsToRanges.R id2name.R transcripts.R\ntranscriptsBy.R transcriptsByOverlaps.R transcriptLengths.R\nexonicParts.R extendExonsIntoIntrons.R features.R tRNAs.R\nextractTranscriptSeqs.R extractUpstreamSeqs.R\ngetPromoterSeq-methods.R select-methods.R nearest-methods.R\ntranscriptLocs2refLocs.R coordinate-mapping-methods.R\nproteinToGenome.R coverageByTranscript.R zzz.R", "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libpng-dev libxml2-dev\nlibssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-08-27 01:49:12 UTC", "RemoteUrl": "https://github.com/bioc/GenomicFeatures", "RemoteRef": "HEAD", "RemoteSha": "406313962cfb98d282a85728b9718f096c317bc5", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-11-01 12:56:59 UTC", "User": "root" }, "Author": "H. Pagès [aut, cre],\nM. Carlson [aut],\nP. Aboyoun [aut],\nS. Falcon [aut],\nM. Morgan [aut],\nD. Sarkar [aut],\nM. Lawrence [aut],\nV. Obenchain [aut],\nS. Arora [ctb],\nJ. MacDonald [ctb],\nM. Ramos [ctb],\nS. Saini [ctb],\nP. Shannon [ctb],\nL. Shepherd [ctb],\nD. Tenenbaum [ctb],\nD. Van Twisk [ctb]", "Maintainer": "H. Pagès ", "_user": "bioc", "_type": "src", "_file": "GenomicFeatures_1.65.0.tar.gz", "_fileid": "https://r2.ropensci.org/2cb0eb5e4acd96b3cb25ec4f2a25151b3f69a5c213970f433f90ac771e788543", "_filesize": 654074, "_sha256": "2cb0eb5e4acd96b3cb25ec4f2a25151b3f69a5c213970f433f90ac771e788543", "_expires": "2027-02-09T14:08:57.000Z", "_created": "2026-11-01T12:56:59.000Z", "_published": "2026-11-01T14:08:59.641Z", "_upstream": "https://github.com/bioc/GenomicFeatures", "_status": "success", "_maintainer": { "name": "H. Pagès", "email": "hpages.on.github@gmail.com", "login": "hpages", "linkedin": "in/hervé-pagès-5038527", "description": "", "uuid": 8810451 }, "_jobs": [ { "job": 124855065328, "time": 345, "config": "bioc-checks", "r": "4.6.2", "check": "WARNING", "artifact": "13085056758" }, { "job": 124855065212, "time": 410, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "13084836702" }, { "job": 124855065211, "time": 748, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "13084699215" }, { "job": 124855065239, "time": 555, "config": "linux-release-arm64", "r": "4.6.2", "check": "ERROR", "artifact": "13085235577" }, { "job": 124855065180, "time": 718, "config": "linux-release-x86_64", "r": "4.6.2", "check": "ERROR", "artifact": "13085390923" }, { "job": 124855065218, "time": 579, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "13086076497" }, { "job": 124855065197, "time": 1025, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "13085847196" }, { "job": 124855065222, "time": 595, "config": "macos-release-arm64", "r": "4.6.2", "check": "ERROR", "artifact": "13086335958" }, { "job": 124855065205, "time": 959, "config": "macos-release-x86_64", "r": "4.6.2", "check": "ERROR", "artifact": "13085506396" }, { "job": 124852725448, "time": 616, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13084701418" }, { "job": 124855065162, "time": 295, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13084713162" }, { "job": 124855065168, "time": 616, "config": "windows-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "13084951965" }, { "job": 124855065176, "time": 611, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "13084468382" }, { "job": 124855065334, "time": 592, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "13085231518" }, { "job": 124855065242, "time": 658, "config": "windows-release-arm64", "r": "4.6.2", "check": "ERROR", "artifact": "13084368378" }, { "job": 124855065181, "time": 581, "config": "windows-release-x86_64", "r": "4.6.2", "check": "ERROR", "artifact": "13084742092" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 15 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243", "_commit": { "id": "406313962cfb98d282a85728b9718f096c317bc5", "author": "Hervé Pagès ", "committer": "Hervé Pagès ", "message": "spelling\n", "time": 1787795352 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "BiocGenerics", "version": ">= 0.51.2", "role": "Depends" }, { "package": "S4Vectors", "version": ">= 0.47.6", "role": "Depends" }, { "package": "IRanges", "version": ">= 2.37.1", "role": "Depends" }, { "package": "Seqinfo", "version": ">= 0.99.2", "role": "Depends" }, { "package": "GenomicRanges", "version": ">= 1.61.1", "role": "Depends" }, { "package": "AnnotationDbi", "version": ">= 1.41.4", "role": "Depends" }, { "package": "S4Vectors", "role": "LinkingTo" }, { "package": "IRanges", "role": "LinkingTo" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "DBI", "role": "Imports" }, { "package": "XVector", "role": "Imports" }, { "package": "Biostrings", "version": ">= 2.77.2", "role": "Imports" }, { "package": "rtracklayer", "version": ">= 1.69.1", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Suggests" }, { "package": "txdbmaker", "role": "Suggests" }, { "package": "org.Mm.eg.db", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "BSgenome", "role": "Suggests" }, { "package": "BSgenome.Hsapiens.UCSC.hg19", "version": ">= 1.3.17", "role": "Suggests" }, { "package": "BSgenome.Celegans.UCSC.ce11", "role": "Suggests" }, { "package": "BSgenome.Dmelanogaster.UCSC.dm3", "version": ">= 1.3.17", "role": "Suggests" }, { "package": "FDb.UCSC.tRNAs", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg19.knownGene", "role": "Suggests" }, { "package": "TxDb.Celegans.UCSC.ce11.ensGene", "role": "Suggests" }, { "package": "TxDb.Dmelanogaster.UCSC.dm3.ensGene", "version": ">= 2.7.1", "role": "Suggests" }, { "package": "TxDb.Mmusculus.UCSC.mm10.knownGene", "version": ">= 3.4.7", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg38.knownGene", "version": ">= 3.4.6", "role": "Suggests" }, { "package": "SNPlocs.Hsapiens.dbSNP144.GRCh38", "role": "Suggests" }, { "package": "Rsamtools", "role": "Suggests" }, { "package": "pasillaBamSubset", "version": ">= 0.0.5", "role": "Suggests" }, { "package": "GenomicAlignments", "version": ">= 1.15.7", "role": "Suggests" }, { "package": "ensembldb", "role": "Suggests" }, { "package": "AnnotationFilter", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 416, "_updates": [ { "week": "2025-44", "n": 4 }, { "week": "2026-14", "n": 1 }, { "week": "2026-18", "n": 3 }, { "week": "2026-35", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.65.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.64.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "genetics", "infrastructure", "annotation", "sequencing", "genomeannotation", "bioconductor-package", "core-package" ], "_stars": 27, "_contributors": [ { "user": "hpages", "count": 165, "uuid": 8810451 }, { "user": "dtenenba", "count": 31, "uuid": 2286826 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "pshannon-bioc", "count": 9, "uuid": 2285629 }, { "user": "jmacdon", "count": 7, "uuid": 5940924 }, { "user": "lawremi", "count": 6, "uuid": 158190 }, { "user": "mtmorgan", "count": 6, "uuid": 118552 }, { "user": "sonali-bioc", "count": 5, "uuid": 6373953 }, { "user": "dvantwisk", "count": 4, "uuid": 10927671 }, { "user": "lshep", "count": 4, "uuid": 18724380 }, { "user": "vobencha", "count": 4, "uuid": 2466173 }, { "user": "sanchit-saini", "count": 1, "uuid": 49326387 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 43114, "source": "https://www.bioconductor.org/packages/stats/bioc/GenomicFeatures" }, "_mentions": 141, "_devurl": "https://github.com/bioconductor/genomicfeatures", "_searchresults": 7512, "_abi": { "exports": [ { "key": "GenomicFeatures::FeatureDb", "hash": "59cde2c3b573a0f9" }, { "key": "GenomicFeatures::TxDb", "hash": "8e92bc9283c8393f" }, { "key": "GenomicFeatures::generic:cds", "hash": "d4a6f9686f87db29" }, { "key": "GenomicFeatures::generic:cdsBy", "hash": "402de646fe4faca5" }, { "key": "GenomicFeatures::generic:cdsByOverlaps", "hash": "580e864e31ce4cd0" }, { "key": "GenomicFeatures::generic:exons", "hash": "a1a9a6280bc94f82" }, { "key": "GenomicFeatures::generic:exonsBy", "hash": "567583e1d007a40b" }, { "key": "GenomicFeatures::generic:exonsByOverlaps", "hash": "47f64765cb799c59" }, { "key": "GenomicFeatures::generic:extractTranscriptSeqs", "hash": "0d231e4adf2c8f31" }, { "key": "GenomicFeatures::generic:extractUpstreamSeqs", "hash": "0c8fef96c1e6ae49" }, { "key": "GenomicFeatures::generic:features", "hash": "8d2f1f921cbedbeb" }, { "key": "GenomicFeatures::generic:fiveUTRsByTranscript", "hash": "ffa31dd083c3c8d9" }, { "key": "GenomicFeatures::generic:genes", "hash": "f85851acb2d387bc" }, { "key": "GenomicFeatures::generic:getPromoterSeq", "hash": "7778fa4d4627f116" }, { "key": "GenomicFeatures::generic:getTerminatorSeq", "hash": "5c615cb16bdefaab" }, { "key": "GenomicFeatures::generic:intronsByTranscript", "hash": "c3532ce9da7266eb" }, { "key": "GenomicFeatures::generic:isActiveSeq", "hash": "ea692f2bc3e19f22" }, { "key": "GenomicFeatures::generic:isActiveSeq<-", "hash": "19f8d48839bb4e40" }, { "key": "GenomicFeatures::generic:mapFromTranscripts", "hash": "eaa5ae0632f7a92c" }, { "key": "GenomicFeatures::generic:mapIdsToRanges", "hash": "fe38c656e117111f" }, { "key": "GenomicFeatures::generic:mapRangesToIds", "hash": "5685d3a9b03eefd5" }, { "key": "GenomicFeatures::generic:mapToTranscripts", "hash": "d827291734f769b5" }, { "key": "GenomicFeatures::generic:pmapFromTranscripts", "hash": "ffc0e624f883403b" }, { "key": "GenomicFeatures::generic:pmapToTranscripts", "hash": "d2186471891d697f" }, { "key": "GenomicFeatures::generic:projectOnTranscripts", "hash": "95d62d455e895f46" }, { "key": "GenomicFeatures::generic:proteinToGenome", "hash": "0bb24f28c8a5cd1c" }, { "key": "GenomicFeatures::generic:tRNAs", "hash": "b3d9ee6bb77f78d6" }, { "key": "GenomicFeatures::generic:threeUTRsByTranscript", "hash": "a73384a040a07c6a" }, { "key": "GenomicFeatures::generic:transcripts", "hash": "b21ba69b2017e574" }, { "key": "GenomicFeatures::generic:transcriptsBy", "hash": "f54356e516619321" }, { "key": "GenomicFeatures::generic:transcriptsByOverlaps", "hash": "35fe87dbb405ea1f" } ], "imports": [ { "key": "AnnotationDbi::AnnotationDb", "hash": "a4bdd04b3ae79fb2" }, { "key": "AnnotationDbi::generic:columns", "hash": "05e2c7067b5e829f" }, { "key": "AnnotationDbi::generic:keys", "hash": "931ea12e0913cf48" }, { "key": "AnnotationDbi::generic:keytypes", "hash": "1861f8e46f59b1c3" }, { "key": "AnnotationDbi::generic:select", "hash": "ba90536ae2ef92ed" }, { "key": "BiocGenerics::OutOfMemoryObject", "hash": "7055a8b4d0828e39" }, { "key": "BiocGenerics::generic:organism", "hash": "ab8f0a44c2b4a1e8" }, { "key": "BiocGenerics::generic:saveRDS", "hash": "c5c8cc092d8fefd0" }, { "key": "IRanges::_alloc_IRanges()", "hash": "1911ce2d8bd5f3ec" }, { "key": "IRanges::_copy_IRanges_slots()", "hash": "55c0d367bcabfa54" }, { "key": "IRanges::_get_CompressedList_length()", "hash": "2a2d7b8a802d4103" }, { "key": "IRanges::_get_CompressedList_names()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_CompressedList_partitioning()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_CompressedList_unlistData()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_H2LGrouping_high2low()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_H2LGrouping_low2high()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_IRanges_length()", "hash": "2a2d7b8a802d4103" }, { "key": "IRanges::_get_IRanges_names()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_IRanges_start()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_IRanges_width()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_PartitioningByEnd_end()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_Partitioning_names()", "hash": "33a97ea62b293da6" }, { "key": "IRanges::_get_eltNROWS_from_CompressedIRangesList_holder()", "hash": "4ba35a3a51c1149d" }, { "key": "IRanges::_get_elt_from_CompressedIRangesList_holder()", "hash": "55d6e98c10cfe6f7" }, { "key": "IRanges::_get_elt_from_CompressedIntsList_holder()", "hash": "d3c48ab1e7be6678" }, { "key": "IRanges::_get_end_elt_from_IRanges_holder()", "hash": "1222f133193cc43e" }, { "key": "IRanges::_get_length_from_CompressedIRangesList_holder()", "hash": "c9ee3347cad92c4b" }, { "key": "IRanges::_get_length_from_CompressedIntsList_holder()", "hash": "22e986822b574070" }, { "key": "IRanges::_get_length_from_IRanges_holder()", "hash": "af12ab990d80bbcb" }, { "key": "IRanges::_get_linear_subset_from_IRanges_holder()", "hash": "cc308bb21fa3a8f3" }, { "key": "IRanges::_get_names_elt_from_IRanges_holder()", "hash": "81007d01eb078d5f" }, { "key": "IRanges::_get_start_elt_from_IRanges_holder()", "hash": "1222f133193cc43e" }, { "key": "IRanges::_get_width_elt_from_IRanges_holder()", "hash": "1222f133193cc43e" }, { "key": "IRanges::_hold_CompressedIRangesList()", "hash": "c33027dd5f55fdf9" }, { "key": "IRanges::_hold_CompressedIntegerList()", "hash": "0afe81601b52d618" }, { "key": "IRanges::_hold_IRanges()", "hash": "c87a41ce14f48fa5" }, { "key": "IRanges::_invert_overlap_code()", "hash": "a9923e92cf379bec" }, { "key": "IRanges::_new_CompressedList()", "hash": "8af3c1bf9cdb9454" }, { "key": "IRanges::_new_IRanges()", "hash": "9770ed7ae349657a" }, { "key": "IRanges::_new_IRanges_from_IntPairAE()", "hash": "9a36cd96547d412d" }, { "key": "IRanges::_new_PartitioningByEnd()", "hash": "8af3c1bf9cdb9454" }, { "key": "IRanges::_new_list_of_IRanges_from_IntPairAEAE()", "hash": "2cdb997bc8125e16" }, { "key": "IRanges::_set_IRanges_names()", "hash": "55c0d367bcabfa54" }, { "key": "IRanges::generic:distance", "hash": "7919a98b537e34ae" }, { "key": "IRanges::generic:promoters", "hash": "45bd516df9857e4e" }, { "key": "IRanges::generic:terminators", "hash": "fbf66607dd075f4b" }, { "key": "S4Vectors::_CharAEAE_append_string()", "hash": "13431b7793b1a8de" }, { "key": "S4Vectors::_CharAEAE_extend()", "hash": "18e62942f06498a2" }, { "key": "S4Vectors::_CharAEAE_get_nelt()", "hash": "f36268759dfc98a1" }, { "key": "S4Vectors::_CharAEAE_insert_at()", "hash": "faf974caa50ac3b8" }, { "key": "S4Vectors::_CharAEAE_set_nelt()", "hash": "2bc05464f1352f5a" }, { "key": "S4Vectors::_CharAE_append_string()", "hash": "471729b0e3ea3bca" }, { "key": "S4Vectors::_CharAE_delete_at()", "hash": "da3f412a233527b0" }, { "key": "S4Vectors::_CharAE_extend()", "hash": "abce3f4d6b967e3d" }, { "key": "S4Vectors::_CharAE_get_nelt()", "hash": "a30ff44c8e3de529" }, { "key": "S4Vectors::_CharAE_insert_at()", "hash": "eff66dfceab00517" }, { "key": "S4Vectors::_CharAE_set_nelt()", "hash": "3dfa134a2155d880" }, { "key": "S4Vectors::_DoubleAE_append()", "hash": "4eb24195355a6539" }, { "key": "S4Vectors::_DoubleAE_delete_at()", "hash": "afcf29fcdb93dd4d" }, { "key": "S4Vectors::_DoubleAE_extend()", "hash": "9550c8a334ca0473" }, { "key": "S4Vectors::_DoubleAE_get_nelt()", "hash": "59fd749ec209563c" }, { "key": "S4Vectors::_DoubleAE_insert_at()", "hash": "541957b23b94746b" }, { "key": "S4Vectors::_DoubleAE_set_nelt()", "hash": "e58d66f0f1138952" }, { "key": "S4Vectors::_DoubleAE_set_val()", "hash": "40e42d8e8417c4d4" }, { "key": "S4Vectors::_IntAEAE_extend()", "hash": "510df193423aa99e" }, { "key": "S4Vectors::_IntAEAE_get_nelt()", "hash": "5bdcf4ce2d6891c7" }, { "key": "S4Vectors::_IntAEAE_insert_at()", "hash": "792a59cf48447da1" }, { "key": "S4Vectors::_IntAEAE_pappend()", "hash": "24d6304bdb0d90f0" }, { "key": "S4Vectors::_IntAEAE_set_nelt()", "hash": "10fcdee5d7174505" }, { "key": "S4Vectors::_IntAEAE_shift()", "hash": "101e82d192fc711d" }, { "key": "S4Vectors::_IntAEAE_sum_and_shift()", "hash": "76a990392af34e1c" }, { "key": "S4Vectors::_IntAEAE_toEnvir()", "hash": "daf8d8f4b6c99422" }, { "key": "S4Vectors::_IntAE_append()", "hash": "4c2761aebc1d5fec" }, { "key": "S4Vectors::_IntAE_delete_at()", "hash": "969ea28fb73f305a" }, { "key": "S4Vectors::_IntAE_extend()", "hash": "cd867721e5f3fccd" }, { "key": "S4Vectors::_IntAE_get_nelt()", "hash": "e6ccbfc4abab24bf" }, { "key": "S4Vectors::_IntAE_insert_at()", "hash": "e69e1abe3dbf914d" }, { "key": "S4Vectors::_IntAE_qsort()", "hash": "e69e1abe3dbf914d" }, { "key": "S4Vectors::_IntAE_set_nelt()", "hash": "0df28f925a5c4ec8" }, { "key": "S4Vectors::_IntAE_set_val()", "hash": "4680cd2717c09f4a" }, { "key": "S4Vectors::_IntAE_shift()", "hash": "e69e1abe3dbf914d" }, { "key": "S4Vectors::_IntAE_sum_and_shift()", "hash": "144ac9e9e2cc7508" }, { "key": "S4Vectors::_IntAE_uniq()", "hash": "cd867721e5f3fccd" }, { "key": "S4Vectors::_IntPairAEAE_extend()", "hash": "4e98facc8fa2c8e1" }, { "key": "S4Vectors::_IntPairAEAE_get_nelt()", "hash": "6863a3053c3829d9" }, { "key": "S4Vectors::_IntPairAEAE_insert_at()", "hash": "73de3765a0dfae83" }, { "key": "S4Vectors::_IntPairAEAE_set_nelt()", "hash": "14de73cca150a220" }, { "key": "S4Vectors::_IntPairAE_extend()", "hash": "d3f8be207fae9f2a" }, { "key": "S4Vectors::_IntPairAE_get_nelt()", "hash": "3c4e764eb15ec77b" }, { "key": "S4Vectors::_IntPairAE_insert_at()", "hash": "1924e2adb94d5bb2" }, { "key": "S4Vectors::_IntPairAE_set_nelt()", "hash": "45f5048929d0fb90" }, { "key": "S4Vectors::_LLongAEAE_extend()", "hash": "d35990f45183c900" }, { "key": "S4Vectors::_LLongAEAE_get_nelt()", "hash": "d85effaf212aeda6" }, { "key": "S4Vectors::_LLongAEAE_insert_at()", "hash": "78e77a9210edb2c4" }, { "key": "S4Vectors::_LLongAEAE_set_nelt()", "hash": "1642b058a064223d" }, { "key": "S4Vectors::_LLongAE_extend()", "hash": "b37ca08df6c28ac7" }, { "key": "S4Vectors::_LLongAE_get_nelt()", "hash": "7660f63a4e462d4e" }, { "key": "S4Vectors::_LLongAE_insert_at()", "hash": "8bb57509e98d8541" }, { "key": "S4Vectors::_LLongAE_set_nelt()", "hash": "715f5812b4e706da" }, { "key": "S4Vectors::_LLongAE_set_val()", "hash": "647bfc6857754ea7" }, { "key": "S4Vectors::_alloc_LLint()", "hash": "0426b4ceb8bf9f6e" }, { "key": "S4Vectors::_as_int()", "hash": "d3d9ddf35cde8eac" }, { "key": "S4Vectors::_check_integer_pairs()", "hash": "f33ababe7813b609" }, { "key": "S4Vectors::_construct_Rle()", "hash": "628a93a3f98ea6d7" }, { "key": "S4Vectors::_construct_character_Rle()", "hash": "628a93a3f98ea6d7" }, { "key": "S4Vectors::_construct_complex_Rle()", "hash": "1d7a89fc89ebd9a0" }, { "key": "S4Vectors::_construct_integer_Rle()", "hash": "d4d0ed89d98172a3" }, { "key": "S4Vectors::_construct_logical_Rle()", "hash": "d4d0ed89d98172a3" }, { "key": "S4Vectors::_construct_numeric_Rle()", "hash": "c0f1f8b29a528f3a" }, { "key": "S4Vectors::_construct_raw_Rle()", "hash": "646533d3e2dcec2d" }, { "key": "S4Vectors::_copy_vector_block()", "hash": "8e80cf4b873414a6" }, { "key": "S4Vectors::_copy_vector_positions()", "hash": "942d1590e048b9e8" }, { "key": "S4Vectors::_copy_vector_ranges()", "hash": "84e775dbe3766f91" }, { "key": "S4Vectors::_extract_bytes_by_positions()", "hash": "ee51db3f938d32d1" }, { "key": "S4Vectors::_extract_bytes_by_ranges()", "hash": "750071c798c79e77" }, { "key": "S4Vectors::_find_interv_and_start_from_width()", "hash": "788dd9d6bd3a2b26" }, { "key": "S4Vectors::_get_LLint_dataptr()", "hash": "5e954df7b6a61e64" }, { "key": "S4Vectors::_get_LLint_length()", "hash": "f8f171bf7848e073" }, { "key": "S4Vectors::_get_List_elementType()", "hash": "b9506dcc532aefab" }, { "key": "S4Vectors::_get_classname()", "hash": "b9506dcc532aefab" }, { "key": "S4Vectors::_get_hbucket_val()", "hash": "55a6c2cf39202a32" }, { "key": "S4Vectors::_get_matches_of_ordered_int_pairs()", "hash": "30fa6ed1f10b6e89" }, { "key": "S4Vectors::_get_matches_of_ordered_int_quads()", "hash": "91a9f2a0f6c46d84" }, { "key": "S4Vectors::_get_order_of_int_array()", "hash": "253fc8781f8e04fe" }, { "key": "S4Vectors::_get_order_of_int_pairs()", "hash": "5ce07f0a1094e7c1" }, { "key": "S4Vectors::_get_order_of_int_quads()", "hash": "b5bdd8e84beeadd3" }, { "key": "S4Vectors::_get_ovflow_flag()", "hash": "49132affc9735f85" }, { "key": "S4Vectors::_get_select_mode()", "hash": "2a2d7b8a802d4103" }, { "key": "S4Vectors::_increase_buflength()", "hash": "92fd0ab51072e5f8" }, { "key": "S4Vectors::_is_LLint()", "hash": "2a2d7b8a802d4103" }, { "key": "S4Vectors::_list_as_data_frame()", "hash": "89b500ce8b4be99c" }, { "key": "S4Vectors::_new_CHARACTER_from_CharAEAE()", "hash": "a0a90c285ae8b59a" }, { "key": "S4Vectors::_new_CHARSXP_from_CharAE()", "hash": "6a5a88f3fcd71421" }, { "key": "S4Vectors::_new_CharAE()", "hash": "2beed20ab90ca70b" }, { "key": "S4Vectors::_new_CharAEAE()", "hash": "67a632c3c222ca98" }, { "key": "S4Vectors::_new_CharAE_from_string()", "hash": "2c761bf84d430b98" }, { "key": "S4Vectors::_new_DFrame()", "hash": "9770ed7ae349657a" }, { "key": "S4Vectors::_new_DoubleAE()", "hash": "66a220193169a4a9" }, { "key": "S4Vectors::_new_DoubleAE_from_NUMERIC()", "hash": "cf931e14afa23b4e" }, { "key": "S4Vectors::_new_Hits()", "hash": "fd5fd548c642ffb3" }, { "key": "S4Vectors::_new_INTEGER_from_IntAE()", "hash": "3ad99796a4e7e924" }, { "key": "S4Vectors::_new_IntAE()", "hash": "26bbe984d9003e07" }, { "key": "S4Vectors::_new_IntAEAE()", "hash": "44d17e547c25cb1e" }, { "key": "S4Vectors::_new_IntAEAE_from_LIST()", "hash": "eed4c1c68c9b4549" }, { "key": "S4Vectors::_new_IntAE_from_CHARACTER()", "hash": "5ac510ce80092446" }, { "key": "S4Vectors::_new_IntAE_from_INTEGER()", "hash": "13653d967df40eb7" }, { "key": "S4Vectors::_new_IntPairAE()", "hash": "1f547cf8631181e8" }, { "key": "S4Vectors::_new_IntPairAEAE()", "hash": "c2f8e37c13f64778" }, { "key": "S4Vectors::_new_LIST_from_IntAEAE()", "hash": "6c038869c083a87d" }, { "key": "S4Vectors::_new_LLongAE()", "hash": "f440a21d72dbee29" }, { "key": "S4Vectors::_new_LLongAEAE()", "hash": "69327110876a161f" }, { "key": "S4Vectors::_new_LOGICAL_from_CharAE()", "hash": "6a5a88f3fcd71421" }, { "key": "S4Vectors::_new_LOGICAL_from_IntAE()", "hash": "3ad99796a4e7e924" }, { "key": "S4Vectors::_new_NUMERIC_from_DoubleAE()", "hash": "29321c85cdb30bb7" }, { "key": "S4Vectors::_new_RAW_from_CharAE()", "hash": "6a5a88f3fcd71421" }, { "key": "S4Vectors::_new_SimpleList()", "hash": "5ff10e460b4147ef" }, { "key": "S4Vectors::_new_SortedByQueryHits_from_IntAEAE()", "hash": "1e648fe983766ae8" }, { "key": "S4Vectors::_new_htab()", "hash": "4e71b39d9fa542ec" }, { "key": "S4Vectors::_positions_mapper()", "hash": "8404d1021181e1ba" }, { "key": "S4Vectors::_ranges_mapper()", "hash": "c6ec4580e7c2bf18" }, { "key": "S4Vectors::_reset_ovflow_flag()", "hash": "388b1487601e3384" }, { "key": "S4Vectors::_safe_int_add()", "hash": "9308f4fd74866595" }, { "key": "S4Vectors::_safe_int_mult()", "hash": "9308f4fd74866595" }, { "key": "S4Vectors::_safe_llint_add()", "hash": "c00db841cec8fd28" }, { "key": "S4Vectors::_safe_llint_mult()", "hash": "c00db841cec8fd28" }, { "key": "S4Vectors::_set_List_elementType()", "hash": "904db26a2e5c6a91" }, { "key": "S4Vectors::_set_hbucket_val()", "hash": "89b238a9c2d06d6e" }, { "key": "S4Vectors::_sort_int_array()", "hash": "ca22adce8021b348" }, { "key": "S4Vectors::_sort_int_pairs()", "hash": "9e4a66813f99b8c5" }, { "key": "S4Vectors::_sort_ints()", "hash": "941c6720e08a1a6a" }, { "key": "S4Vectors::_vector_memcmp()", "hash": "f28d93135432aa51" }, { "key": "Seqinfo::generic:seqinfo", "hash": "1eb5bbe2fff73b75" }, { "key": "Seqinfo::generic:seqinfo<-", "hash": "3818365f39e745d0" }, { "key": "Seqinfo::generic:seqlevels0", "hash": "8adf19d33a6d8f80" }, { "key": "Seqinfo::generic:seqlevels<-", "hash": "45cfe19f4fa1e925" }, { "key": "rtracklayer::generic:asBED", "hash": "e1bd29aab0342e8d" }, { "key": "rtracklayer::generic:asGFF", "hash": "4c030ec59811f32a" }, { "key": "rtracklayer::generic:bestFileFormat", "hash": "7d46b4394329c7f7" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GenomicFeatures.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/bioconductor/genomicfeatures", "_realowner": "bioc", "_cranurl": false, "_exports": [ "as.list", "asBED", "asGFF", "cds", "cdsBy", "cdsByOverlaps", "coverageByTranscript", "distance", "exonicParts", "exons", "exonsBy", "exonsByOverlaps", "extendExonsIntoIntrons", "extractTranscriptSeqs", "extractUpstreamSeqs", "features", "fiveUTRsByTranscript", "genes", "getPromoterSeq", "getTerminatorSeq", "id2name", "intronicParts", "intronsByTranscript", "isActiveSeq", "isActiveSeq<-", "mapFromTranscripts", "mapIdsToRanges", "mapRangesToIds", "mapToTranscripts", "organism", "pcoverageByTranscript", "pmapFromTranscripts", "pmapToTranscripts", "promoters", "proteinToGenome", "seqinfo", "seqlevels<-", "seqlevels0", "show", "terminators", "threeUTRsByTranscript", "tidyExons", "tidyIntrons", "tidyTranscripts", "transcriptLengths", "transcriptLocs2refLocs", "transcripts", "transcriptsBy", "transcriptsByOverlaps", "transcriptWidths", "tRNAs" ], "_help": [ { "page": "as-format-methods", "title": "Coerce to file format structures", "topics": [ "asBED,TxDb-method", "asGFF,TxDb-method" ] }, { "page": "coverageByTranscript", "title": "Compute coverage by transcript (or CDS) of a set of ranges", "topics": [ "coverageByTranscript", "pcoverageByTranscript" ] }, { "page": "exonicParts", "title": "Extract non-overlapping exonic or intronic parts from a TxDb-like object", "topics": [ "exonicParts", "intronicParts", "tidyExons", "tidyIntrons", "tidyTranscripts" ] }, { "page": "extendExonsIntoIntrons", "title": "Extend exons by a given number of bases into their adjacent introns", "topics": [ "extendExonsIntoIntrons" ] }, { "page": "extractTranscriptSeqs", "title": "Extract transcript (or CDS) sequences from chromosome sequences", "topics": [ "extractTranscriptSeqs", "extractTranscriptSeqs,ANY-method", "extractTranscriptSeqs,DNAString-method" ] }, { "page": "extractUpstreamSeqs", "title": "Extract sequences upstream of a set of genes or transcripts", "topics": [ "extractUpstreamSeqs", "extractUpstreamSeqs,GenomicRanges-method", "extractUpstreamSeqs,GRangesList-method", "extractUpstreamSeqs,TxDb-method" ] }, { "page": "FeatureDb-class", "title": "FeatureDb objects", "topics": [ "class:FeatureDb", "FeatureDb", "FeatureDb-class" ] }, { "page": "features", "title": "Extract simple features from a FeatureDb object", "topics": [ "features", "features,FeatureDb-method" ] }, { "page": "getPromoterSeq-methods", "title": "Get gene promoter or terminator sequences", "topics": [ "getPromoterSeq", "getPromoterSeq,GRanges-method", "getPromoterSeq,GRangesList-method", "getTerminatorSeq", "getTerminatorSeq,GRanges-method", "getTerminatorSeq,GRangesList-method" ] }, { "page": "id2name", "title": "Map internal ids to external names for a given feature type", "topics": [ "id2name" ] }, { "page": "mapIdsToRanges", "title": "Map IDs to Genomic Ranges", "topics": [ "mapIdsToRanges", "mapIdsToRanges,TxDb-method" ] }, { "page": "mapRangesToIds", "title": "Map Genomic Ranges to IDs", "topics": [ "mapRangesToIds", "mapRangesToIds,TxDb-method" ] }, { "page": "coordinate-mapping-methods", "title": "Map range coordinates between transcripts and genome space", "topics": [ "coordinate-mapping", "coordinate-mapping-methods", "mapFromTranscripts", "mapFromTranscripts,GenomicRanges,GenomicRanges-method", "mapFromTranscripts,GenomicRanges,GRangesList-method", "mapToTranscripts", "mapToTranscripts,ANY,TxDb-method", "mapToTranscripts,GenomicRanges,GenomicRanges-method", "mapToTranscripts,GenomicRanges,GRangesList-method", "pmapFromTranscripts", "pmapFromTranscripts,GenomicRanges,GenomicRanges-method", "pmapFromTranscripts,GenomicRanges,GRangesList-method", "pmapFromTranscripts,IntegerRanges,GenomicRanges-method", "pmapFromTranscripts,IntegerRanges,GRangesList-method", "pmapToTranscripts", "pmapToTranscripts,GenomicRanges,GenomicRanges-method", "pmapToTranscripts,GenomicRanges,GRangesList-method", "pmapToTranscripts,GRangesList,GRangesList-method" ] }, { "page": "nearest-methods", "title": "Finding the nearest genomic range neighbor in a TxDb", "topics": [ "distance,GenomicRanges,TxDb-method", "nearest-methods" ] }, { "page": "proteinToGenome", "title": "Map protein-relative coordinates to genomic coordinates", "topics": [ "proteinToGenome", "proteinToGenome,ANY-method", "proteinToGenome,GRangesList-method" ] }, { "page": "select-methods", "title": "Using the \"select\" interface on TxDb objects", "topics": [ "columns,TxDb-method", "keys,TxDb-method", "keytypes,TxDb-method", "select,TxDb-method", "select-methods" ] }, { "page": "transcriptLengths", "title": "Extract the transcript lengths (and other metrics) from a TxDb object", "topics": [ "transcriptLengths" ] }, { "page": "transcriptLocs2refLocs", "title": "Converting transcript-based locations into reference-based locations", "topics": [ "transcriptLocs2refLocs", "transcriptWidths" ] }, { "page": "transcripts", "title": "Extract genomic features from a TxDb-like object", "topics": [ "cds", "cds,TxDb-method", "exons", "exons,TxDb-method", "genes", "genes,TxDb-method", "promoters", "promoters,TxDb-method", "terminators", "terminators,TxDb-method", "transcripts", "transcripts,TxDb-method" ] }, { "page": "transcriptsBy", "title": "Extract and group genomic features of a given type from a TxDb-like object", "topics": [ "cdsBy", "cdsBy,TxDb-method", "exonsBy", "exonsBy,TxDb-method", "fiveUTRsByTranscript", "fiveUTRsByTranscript,TxDb-method", "intronsByTranscript", "intronsByTranscript,TxDb-method", "threeUTRsByTranscript", "threeUTRsByTranscript,TxDb-method", "transcriptsBy", "transcriptsBy,TxDb-method" ] }, { "page": "transcriptsByOverlaps", "title": "Extract genomic features from a TxDb-like object based on their genomic location", "topics": [ "cdsByOverlaps", "cdsByOverlaps,TxDb-method", "exonsByOverlaps", "exonsByOverlaps,TxDb-method", "transcriptsByOverlaps", "transcriptsByOverlaps,TxDb-method" ] }, { "page": "tRNAs", "title": "Extract tRNA genomic ranges from an object", "topics": [ "tRNAs", "tRNAs,TxDb-method" ] }, { "page": "TxDb-class", "title": "TxDb objects", "topics": [ "as.list,TxDb-method", "class:TxDb", "isActiveSeq", "isActiveSeq,TxDb-method", "isActiveSeq<-", "isActiveSeq<-,TxDb-method", "organism,TxDb-method", "saveRDS,TxDb-method", "seqinfo,TxDb-method", "seqlevels0,TxDb-method", "seqlevels<-,TxDb-method", "show,TxDb-method", "TxDb", "TxDb-class" ] } ], "_readme": "https://github.com/bioc/GenomicFeatures/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bit", "bit64", "bitops", "blob", "cachem", "cigarillo", "cli", "codetools", "cpp11", "crayon", "curl", "DBI", "fastmap", "formatR", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicRanges", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lambda.r", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "RCurl", "restfulr", "Rhtslib", "rjson", "rlang", "Rsamtools", "RSQLite", "rtracklayer", "S4Vectors", "Seqinfo", "snow", "sys", "vctrs", "XML", "XVector", "yaml" ], "_vignettes": [ { "source": "GenomicFeatures.Rmd", "filename": "GenomicFeatures.html", "title": "Obtaining and Utilizing TxDb Objects", "author": "Marc Carlson, Patrick Aboyoun, Hervé Pagès, Seth Falcon, Martin Morgan", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installing the GenomicFeatures package", "Obtaining a TxDb object", "Retrieving Data from a TxDb object", "Pre-filtering data based on Chromosomes", "Retrieving data using the select() method", "Methods for returning GRanges objects", "Working with Grouped Features", "Predefined grouping functions", "Getting the actual sequence data", "Session Information" ], "created": "2022-01-21 00:49:54", "modified": "2024-03-12 03:33:35", "commits": 5 } ], "_score": 15.418163487862456, "_indexed": true, "_nocasepkg": "genomicfeatures", "_universes": [ "bioc", "hpages", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.65.0", "date": "2026-11-01T13:02:47.000Z", "distro": "resolute", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/d7ecdfb1f74dd46a8d15de1cfd20d29190d863b07954e26e331681f9bcb7778b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.7.0", "os": "linux", "version": "1.65.0", "date": "2026-11-01T13:11:50.000Z", "distro": "resolute", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/2e7bc529dbaa5365046c1b41858ac0d9f49fef6a58985e9910d98dcd75ce4282", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "linux", "version": "1.65.0", "date": "2026-11-01T13:04:05.000Z", "distro": "resolute", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/eb60358590fcfe7f7c27d06757b8aa2eb6de1156a58268bb9a80be4395693bd7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "linux", "version": "1.65.0", "date": "2026-11-01T13:11:26.000Z", "distro": "resolute", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/3f30574650d89a9a6a57432b3fe04a153a1bfdb59c4b85abbdf3fe4d6748837a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.5.3", "os": "mac", "version": "1.65.0", "date": "2026-11-01T13:34:23.000Z", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/3af291422e656803b0c8c4f5208e2ee1573d95f3410561704cb253fe38df2a97", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.5.3", "os": "mac", "version": "1.65.0", "date": "2026-11-01T13:32:18.000Z", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/e3611a86755402388b99602248bd533b2680fa91da9e6c80f0f8e77981287f28", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "mac", "version": "1.65.0", "date": "2026-11-01T13:34:25.000Z", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/d33417f2596f81504ee773fbd0177e06f646f1a1ff491e63fb71a8e2d8646c31", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "mac", "version": "1.65.0", "date": "2026-11-01T13:28:16.000Z", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/95ae7853176831a48f8a61b84929f29ac04e65706ed7e6bdcf5a0d8a20861f0a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.0", "os": "wasm", "version": "1.65.0", "date": "2026-11-01T13:08:25.000Z", "arch": "emscripten", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/d9fc4330ebe8b2ecacba391f869a91786cf04fa91734d5d7b072488aad0ec0f1", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.7.0", "os": "win", "version": "1.65.0", "date": "2026-11-01T13:03:52.000Z", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/0b51e845e69e6525e86b1c0e93402be5fb5b1ddc401a03a36465030069f07be9", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.7.0", "os": "win", "version": "1.65.0", "date": "2026-11-01T13:08:11.000Z", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/60ed78e6db58445f9dff70c7da308401c8a51d5c037a36688aa65eff464049fe", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.5.3", "os": "win", "version": "1.65.0", "date": "2026-11-01T13:08:40.000Z", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/697195b71684457e1c9b3ece37034a05330a08f58c97151af038a7eca035f4a2", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "win", "version": "1.65.0", "date": "2026-11-01T13:05:03.000Z", "arch": "aarch64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/39990df681d0c15d6c20ad0484759910986346eabf57973ffc4de943148cfd70", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" }, { "r": "4.6.2", "os": "win", "version": "1.65.0", "date": "2026-11-01T13:08:00.000Z", "arch": "x86_64", "commit": "406313962cfb98d282a85728b9718f096c317bc5", "fileid": "https://r2.ropensci.org/042e52eaec3269871299a1205546ae57def33475eae62ba543ab71848235e85f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308130243" } ] }