{
  "_id": "6a49482ea788432aeabf419a",
  "Package": "GeneSelectMMD",
  "Type": "Package",
  "Title": "Gene selection based on the marginal distributions of gene\nprofiles that characterized by a mixture of three-component\nmultivariate distributions",
  "Version": "2.57.0",
  "Date": "2020-04-03",
  "Author": "Jarrett Morrow <remdj@channing.harvard.edu>, Weiliang Qiu\n<weiliang.qiu@gmail.com>, Wenqing He <whe@stats.uwo.ca>,\nXiaogang Wang <stevenw@mathstat.yorku.ca>, Ross Lazarus\n<ross.lazarus@channing.harvard.edu>.",
  "Maintainer": "Weiliang Qiu <weiliang.qiu@gmail.com>",
  "Description": "Gene selection based on a mixture of marginal\ndistributions.",
  "License": "GPL (>= 2)",
  "Packaged": {
    "Date": "2026-07-03 09:52:33 UTC",
    "User": "root"
  },
  "biocViews": "DifferentialExpression",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:47 UTC",
  "RemoteUrl": "https://github.com/bioc/GeneSelectMMD",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d4e371c6b93f485028a2467ea758de81b7596e1",
  "NeedsCompilation": "yes",
  "_user": "bioc",
  "_type": "src",
  "_file": "GeneSelectMMD_2.57.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/95599b75d6d4e3ad9e1c229db1864967e7043b1cafa4e289ffad755110f7c2db",
  "_filesize": 553454,
  "_sha256": "95599b75d6d4e3ad9e1c229db1864967e7043b1cafa4e289ffad755110f7c2db",
  "_expires": "2026-10-12T17:51:40.000Z",
  "_created": "2026-07-03T09:52:33.000Z",
  "_published": "2026-07-04T17:51:42.036Z",
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 14
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141",
  "_status": "success",
  "_upstream": "https://github.com/bioc/GeneSelectMMD",
  "_commit": {
    "id": "7d4e371c6b93f485028a2467ea758de81b7596e1",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379627
  },
  "_maintainer": {
    "name": "Weiliang Qiu",
    "email": "weiliang.qiu@gmail.com",
    "login": "weiliang",
    "description": "",
    "uuid": 755168
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85153800049,
      "time": 147,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8063434538"
    },
    {
      "job": 85153800234,
      "time": 133,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8063431339"
    },
    {
      "job": 85153799943,
      "time": 179,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8063445905"
    },
    {
      "job": 85153800237,
      "time": 134,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8063431593"
    },
    {
      "job": 85153800130,
      "time": 169,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8063442553"
    },
    {
      "job": 85153800241,
      "time": 110,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8063421872"
    },
    {
      "job": 85153800123,
      "time": 156,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8063438000"
    },
    {
      "job": 85153799939,
      "time": 130,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8063428712"
    },
    {
      "job": 85153800139,
      "time": 328,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8063495610"
    },
    {
      "job": 85153799837,
      "time": 160,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8063383457"
    },
    {
      "job": 85153799914,
      "time": 97,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8063417419"
    },
    {
      "job": 85153800076,
      "time": 102,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8063419442"
    },
    {
      "job": 85153800223,
      "time": 85,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8063413471"
    },
    {
      "job": 85153800143,
      "time": 111,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8063422080"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.13.2",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.57.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.56.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "differentialexpression",
    "fortran",
    "glibc"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 1,
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GeneSelectMMD.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "errRates",
    "gsMMD",
    "gsMMD.default",
    "gsMMD2",
    "gsMMD2.default",
    "obtainResi",
    "plotHistDensity"
  ],
  "_help": [
    {
      "page": "errRates",
      "title": "Calculating FDR, FNDR, FPR, and FNR for a real microarray data set",
      "topics": [
        "errRates"
      ]
    },
    {
      "page": "gsMMD",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD"
      ]
    },
    {
      "page": "gsMMD.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD.default"
      ]
    },
    {
      "page": "gsMMD2",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2"
      ]
    },
    {
      "page": "gsMMD2.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2.default"
      ]
    },
    {
      "page": "obtainResi",
      "title": "Replace expression levels by the residuals of regression analysis to remove the confounding effects.",
      "topics": [
        "obtainResi"
      ]
    },
    {
      "page": "plotHistDensity",
      "title": "Plot of histogram and density estimate of the pooled gene expression levels.",
      "topics": [
        "plotHistDensity"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "limma",
    "MASS",
    "statmod"
  ],
  "_sysdeps": [
    {
      "shlib": "libgfortran",
      "package": "libgfortran5",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "fortran",
      "homepage": "http://gcc.gnu.org/",
      "description": "Runtime library for GNU Fortran applications"
    },
    {
      "shlib": "libmvec",
      "package": "libc6",
      "headers": "libc6-dev",
      "source": "glibc",
      "version": "2.43-2ubuntu2",
      "name": "glibc",
      "homepage": "https://www.gnu.org/software/libc/libc.html",
      "description": "GNU C Library: Shared libraries"
    }
  ],
  "_vignettes": [
    {
      "source": "gsMMD.Rnw",
      "filename": "gsMMD.pdf",
      "title": "Gene Selection based on a mixture of marginal distributions",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Methods",
        "Reparametrization",
        "Gene selection via GeneSelectMMD",
        "Error rates estimated for real microarray data sets",
        "Visualizing the fit of the model to a real microarray data set",
        "Efficiency improvements",
        "Discussion"
      ],
      "created": "2013-11-01 20:07:50",
      "modified": "2020-03-05 04:52:40",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "geneselectmmd",
  "_universes": [
    "bioc",
    "weiliang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:51.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/1be75b157bec15961da0478785801a33e88124f0ca66cc0e6c6303769a8c63ef",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-07-03T09:55:29.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/f2d6c8693a8f56dffa390b89106bb08095af2ef71f5f81fc3fe278aa0ba8fcab",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:51.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/5dd73a9b4825305ae0795ac6930915e1dcc62af59d92ab115c76b31ea34ef851",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-07-03T09:55:17.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/804e9dc48c9c62efc65a3eb0acb581bf592ab326b5aff75b88b29189f4f5ab7e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:16.000Z",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/50a369173de80237411e9815ce302cbbd754bf2868f2084d5cd0ad6476183974",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:53.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/61d50b708c8a2e31b14502f4d4395cc6b5c30f7b93e9c3f35f63f3095d20d7eb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:22.000Z",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/3634b2b31125a5af6873721df3c403c0c77db69271d68cb4bf889be79a35eca4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-07-03T09:56:52.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/da600b6c9457e4a638d80021725898434d9689b6bb7aabc25fda7857e7a9c63d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.57.0",
      "date": "2026-07-03T09:54:24.000Z",
      "arch": "emscripten",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/07b43c4709a1b2022e59b8e86cbb17fe3e83bcc49c129ebabe9ca5da599d57b0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-07-03T09:53:55.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/ed3441840c4d8afba2193e692be60be184e7e7bfaeb45bc57845909fab809a78",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-07-03T09:53:41.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/d80dafe94e95ecb7e428dc5253bf297ebac27f1dfe45afcd296665d025783142",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-07-03T09:53:49.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "https://r2.ropensci.org/fb5433c047714c0bf08c4d746f05242b5ccff93c92e9ec844e416144672015fe",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28652682141"
    }
  ]
}