{
  "_id": "6a1acf031d7bb097a09e03e8",
  "Package": "GeneSelectMMD",
  "Type": "Package",
  "Title": "Gene selection based on the marginal distributions of gene\nprofiles that characterized by a mixture of three-component\nmultivariate distributions",
  "Version": "2.57.0",
  "Date": "2020-04-03",
  "Author": "Jarrett Morrow <remdj@channing.harvard.edu>, Weiliang Qiu\n<weiliang.qiu@gmail.com>, Wenqing He <whe@stats.uwo.ca>,\nXiaogang Wang <stevenw@mathstat.yorku.ca>, Ross Lazarus\n<ross.lazarus@channing.harvard.edu>.",
  "Maintainer": "Weiliang Qiu <weiliang.qiu@gmail.com>",
  "Description": "Gene selection based on a mixture of marginal\ndistributions.",
  "License": "GPL (>= 2)",
  "Packaged": {
    "Date": "2026-05-30 08:16:32 UTC",
    "User": "root"
  },
  "biocViews": "DifferentialExpression",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:47 UTC",
  "RemoteUrl": "https://github.com/bioc/GeneSelectMMD",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d4e371c6b93f485028a2467ea758de81b7596e1",
  "NeedsCompilation": "yes",
  "MD5sum": "102ceba6b61d345c78f055d78efb2eec",
  "_user": "bioc",
  "_type": "src",
  "_file": "GeneSelectMMD_2.57.0.tar.gz",
  "_fileid": "192fc72da9fd6635c1c15cb6e0557293f9b752e051a19b557b8429a44c38fe34",
  "_filesize": 550143,
  "_sha256": "192fc72da9fd6635c1c15cb6e0557293f9b752e051a19b557b8429a44c38fe34",
  "_created": "2026-05-30T08:16:32.000Z",
  "_published": "2026-05-30T11:50:27.909Z",
  "_jobs": [
    {
      "job": 78636000468,
      "time": 134,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7306773291"
    },
    {
      "job": 78636000491,
      "time": 117,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7306771735"
    },
    {
      "job": 78636000505,
      "time": 167,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7306776341"
    },
    {
      "job": 78636000498,
      "time": 115,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7306771631"
    },
    {
      "job": 78636000502,
      "time": 131,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7306773100"
    },
    {
      "job": 78636000477,
      "time": 92,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7307961835"
    },
    {
      "job": 78636000475,
      "time": 211,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7306780419"
    },
    {
      "job": 78636000483,
      "time": 105,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307963405"
    },
    {
      "job": 78636000503,
      "time": 197,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306780625"
    },
    {
      "job": 78635844013,
      "time": 183,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306760397"
    },
    {
      "job": 78636000469,
      "time": 93,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306769532"
    },
    {
      "job": 78636000476,
      "time": 89,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306769113"
    },
    {
      "job": 78636000488,
      "time": 102,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7306770325"
    },
    {
      "job": 78636000482,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306768790"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 15
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/GeneSelectMMD",
  "_commit": {
    "id": "7d4e371c6b93f485028a2467ea758de81b7596e1",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379627
  },
  "_maintainer": {
    "name": "Weiliang Qiu",
    "email": "weiliang.qiu@gmail.com",
    "login": "weiliang",
    "description": "",
    "uuid": 755168
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.13.2",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.57.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.56.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "differentialexpression",
    "fortran"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 400,
    "source": "https://www.bioconductor.org/packages/stats/bioc/GeneSelectMMD"
  },
  "_mentions": 1,
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GeneSelectMMD.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "errRates",
    "gsMMD",
    "gsMMD.default",
    "gsMMD2",
    "gsMMD2.default",
    "obtainResi",
    "plotHistDensity"
  ],
  "_help": [
    {
      "page": "errRates",
      "title": "Calculating FDR, FNDR, FPR, and FNR for a real microarray data set",
      "topics": [
        "errRates"
      ]
    },
    {
      "page": "gsMMD",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD"
      ]
    },
    {
      "page": "gsMMD.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD.default"
      ]
    },
    {
      "page": "gsMMD2",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2"
      ]
    },
    {
      "page": "gsMMD2.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2.default"
      ]
    },
    {
      "page": "obtainResi",
      "title": "Replace expression levels by the residuals of regression analysis to remove the confounding effects.",
      "topics": [
        "obtainResi"
      ]
    },
    {
      "page": "plotHistDensity",
      "title": "Plot of histogram and density estimate of the pooled gene expression levels.",
      "topics": [
        "plotHistDensity"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "limma",
    "MASS",
    "statmod"
  ],
  "_sysdeps": [
    {
      "shlib": "libgfortran",
      "package": "libgfortran5",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "fortran",
      "homepage": "http://gcc.gnu.org/",
      "description": "Runtime library for GNU Fortran applications"
    }
  ],
  "_vignettes": [
    {
      "source": "gsMMD.Rnw",
      "filename": "gsMMD.pdf",
      "title": "Gene Selection based on a mixture of marginal distributions",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:07:50",
      "modified": "2020-03-05 04:52:40",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "geneselectmmd",
  "_universes": [
    "bioc",
    "weiliang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-05-30T08:18:34.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "aadef058ceffa51863283d47b129d0f08821815afe733a3b9bbc670cd6b87f92",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-05-30T08:19:19.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "fe02f85032b6ec37f294844c3b2aac84e9eddd83ed005dba04ae33dc400e17a7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-05-30T08:18:33.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "b3eaaf1c5fe820da1fbb48957fd915b9573670e6c79a1d71f36ededf3afebd09",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.57.0",
      "date": "2026-05-30T08:18:46.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "6788022eeccc5456edef1f78d5ddeb63b4ba254abafa52cf5f19cd6793fdeca0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-05-30T11:49:24.000Z",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "85b6ad9bcb30647bc057989b351f7250fd4aed53a5be6921731656fb4a0145be",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-05-30T08:19:48.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "853b0b3ab6fc7597dda2690817589b426942949accf6bf39a256fcecc91b6ac8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-05-30T11:49:47.000Z",
      "arch": "aarch64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "6fb5f4cd46f983e39b4a51f98ac04c13ac763db68ace4bb06773eea8bacb813a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.57.0",
      "date": "2026-05-30T08:19:49.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "268bb8215c017f769a10b52f124256fe88cfa5b0b89b1ad44bbc0e2e16fc00e3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.57.0",
      "date": "2026-05-30T08:18:25.000Z",
      "arch": "emscripten",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "2d2ec0230484ec41de5cd0d0c34cff2a2449f3937abec956f90f87f761b5c65e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-05-30T08:17:50.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "5f1883f239036b0343c8d9d79fbf2728d9a72cacf804f299f447af279fe661df",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-05-30T08:17:48.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "628801df347c1ba69f958764986d484a5c658696ffdc744d172d29c7b249f33c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.57.0",
      "date": "2026-05-30T08:17:44.000Z",
      "arch": "x86_64",
      "commit": "7d4e371c6b93f485028a2467ea758de81b7596e1",
      "fileid": "6a1e3e70629d975a0279f2eb91ab97291964ec7dc4d605c72280325efab46294",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678956412"
    }
  ]
}