{ "_id": "6a1acf9b1d7bb097a09e0a15", "Package": "GeneRegionScan", "Version": "1.69.0", "Date": "2009-10-16", "Title": "GeneRegionScan", "Author": "Lasse Folkersen, Diego Diez", "Maintainer": "Lasse Folkersen ", "LazyLoad": "yes", "Description": "A package with focus on analysis of discrete regions of\nthe genome. This package is useful for investigation of one or\na few genes using Affymetrix data, since it will extract probe\nlevel data using the Affymetrix Power Tools application and\nwrap these data into a ProbeLevelSet. A ProbeLevelSet directly\nextends the expressionSet, but includes additional information\nabout the sequence of each probe and the probe set it is\nderived from. The package includes a number of functions used\nfor plotting these probe level data as a function of location\nalong sequences of mRNA-strands. This can be used for analysis\nof variable splicing, and is especially well suited for use\nwith exon-array data.", "License": "GPL (>= 2)", "biocViews": "Microarray, DataImport, SNP, OneChannel, Visualization", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:51 UTC", "RemoteUrl": "https://github.com/bioc/GeneRegionScan", "RemoteRef": "HEAD", "RemoteSha": "4cb621e13108f36d61110f885a4ce73c5d6668c7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:18:19 UTC", "User": "root" }, "MD5sum": "9b18166bbb88f22609115ffe0a948fb4", "_user": "bioc", "_type": "src", "_file": "GeneRegionScan_1.69.0.tar.gz", "_fileid": "341442d410166bcefb736ef651028a2c9f83fefde8fd1fe4b6accc574d83ff63", "_filesize": 7974567, "_sha256": "341442d410166bcefb736ef651028a2c9f83fefde8fd1fe4b6accc574d83ff63", "_created": "2026-05-30T08:18:19.000Z", "_published": "2026-05-30T11:52:59.465Z", "_jobs": [ { "job": 78636097902, "time": 168, 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"topics": [ "exampleProbeLevelSet" ] }, { "page": "excludeDoubleMatchingProbes", "title": "Exclude ProbeLevelSet probes that match more than once in genome", "topics": [ "excludeDoubleMatchingProbes", "excludeDoubleMatchingProbes,ProbeLevelSet-method" ] }, { "page": "exonStructure", "title": "Add exon-structure to plots", "topics": [ "exonStructure" ] }, { "page": "findProbePositions", "title": "Find positions of probes on a gene", "topics": [ "findProbePositions", "findProbePositions,ExpressionSet-method" ] }, { "page": "findSequenceInGenome", "title": "Find a sequence in genome", "topics": [ "findSequenceInGenome" ] }, { "page": "geneRegionScan", "title": "Gene Region Scan", "topics": [ "GeneRegionScan", "geneRegionScan", "geneRegionScan,ExpressionSet-method" ] }, { "page": "genomic", "title": "genomic sequence of gene in ProbeLevelSet", "topics": [ "genomic" ] }, { "page": "getLocalMetaprobeIntensities", "title": "Get Metaprobe Intensities locally", "topics": [ 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