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  "Title": "Test and visualize gene overlaps",
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  "Date": "2013-12-13",
  "Author": "Li Shen, Icahn School of Medicine at Mount Sinai\n<shenli.sam@gmail.com>",
  "Maintainer": "Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for\nCell Biology and Genetics <amjdomingues@gmail.com>",
  "Description": "Test two sets of gene lists and visualize the results.",
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    {
      "page": "GeneOverlap-package",
      "title": "Test and visualize overlaps between gene lists",
      "topics": [
        "GeneOverlap-package"
      ]
    },
    {
      "page": "drawHeatmap",
      "title": "Visualize GeneOverlapMatrix objects as heatmaps",
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        "drawHeatmap,GeneOverlapMatrix-method"
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    {
      "page": "GeneOverlap",
      "title": "Test overlap between two gene lists using Fisher's exact test.",
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        "print,GeneOverlap-method",
        "show,GeneOverlap-method"
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    {
      "page": "GeneOverlapMatrix",
      "title": "Matrix representation of the pairwise overlaps between two gene sets",
      "topics": [
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        "print,GeneOverlapMatrix-method",
        "show,GeneOverlapMatrix-method"
      ]
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      "title": "Accessors for the \"genome.size\" slot of the GeneOverlap class",
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        "setGenomeSize<-",
        "setGenomeSize<-,GeneOverlap-method"
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    {
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      "title": "Accessors for the \"listA\" and \"listB\" slots of GeneOverlap class",
      "topics": [
        "getListA",
        "getListA,GeneOverlap-method",
        "getListB",
        "getListB,GeneOverlap-method",
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        "setListB<-",
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      "page": "getReadonly",
      "title": "Read-only accessors for the \"intersection\", \"union\", \"is.tested\", \"cont.tbl\", \"pval\", \"odds.ratio\", \"Jaccard\" slots of the GeneOverlap class",
      "topics": [
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        "getContbl,GeneOverlap-method",
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        "getIntersection,GeneOverlap-method",
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        "getUnion,GeneOverlap-method"
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    {
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      "title": "Read-only accessors for the various slots of the GeneOverlapMatrix class",
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        "getGsetA,GeneOverlapMatrix-method",
        "getGsetB",
        "getGsetB,GeneOverlapMatrix-method",
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      "title": "Test function for the GeneOverlap class",
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