{ "_id": "6ac61980f511ae58c09a616f", "Package": "GeDi", "Title": "Defining and visualizing the distances between different\ngenesets", "Version": "1.9.1", "Date": "2026-10-06", "Authors@R": "c(\nperson(\ngiven = \"Annekathrin\", family = \"Nedwed\", role = c(\"aut\", \"cre\"),\nemail = \"anneludt@uni-mainz.de\", comment = c(ORCID = \"0000-0002-2475-4945\")),\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"aut\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n)\n)", "Description": "The package provides different distances measurements to\ncalculate the difference between genesets. Based on these\nscores the genesets are clustered and visualized as graph. This\nis all presented in an interactive Shiny application for easy\nusage.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "URL": "https://github.com/AnnekathrinSilvia/GeDi", "BugReports": "https://github.com/AnnekathrinSilvia/GeDi/issues", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "biocViews": "GUI, GeneSetEnrichment, Software, Transcription, RNASeq,\nVisualization, Clustering, Pathways, ReportWriting, GO, KEGG,\nReactome, ShinyApps", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev perl zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-10-06 11:42:23 UTC", "RemoteUrl": "https://github.com/bioc/GeDi", "RemoteRef": "HEAD", "RemoteSha": "159f29806dd87ff32abe451835e1898f4030e502", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 08:43:20 UTC", "User": "root" }, "Author": "Annekathrin Nedwed 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the cluster it belongs", "topics": [ ".getClusterDatatable" ] }, { "page": "dot-getGenesetDescriptions", "title": "Get gene set descriptions", "topics": [ ".getGenesetDescriptions" ] }, { "page": "dot-getNumberCores", "title": "Determine the number of cores to use for a function", "topics": [ ".getNumberCores" ] }, { "page": "dot-graphMetricsGenesetsDT", "title": "Generate a 'data.frame' of graph metrics", "topics": [ ".graphMetricsGenesetsDT" ] }, { "page": "dot-map_to_color", "title": "Maps numeric values to color values", "topics": [ ".map_to_color" ] }, { "page": "dot-sepguesser", "title": "Make an educated guess on the separator character", "topics": [ ".sepguesser" ] }, { "page": "buildClusterGraph", "title": "Build a cluster graph", "topics": [ "buildClusterGraph" ] }, { "page": "buildGraph", "title": "Construct a graph", "topics": [ "buildGraph" ] }, { "page": "buildHistogramData", "title": "Prepare data for 'gsHistogram()'.", "topics": [ "buildHistogramData" ] }, { "page": 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