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  "_id": "6ad726f2d556c3a3418a6bff",
  "Package": "GWENA",
  "Title": "Pipeline for augmented co-expression analysis",
  "Version": "1.23.0",
  "Authors@R": "c(person(given = \"Gwenaëlle\",\nfamily = \"Lemoine\",\nrole = c(\"aut\", \"cre\"),\nemail = \"lemoine.gwenaelle@gmail.com\",\ncomment = c(ORCID = \"0000-0003-4747-1937\")),\nperson(given = \"Marie-Pier\",\nfamily = \"Scott-Boyer\",\nrole = \"ths\"),\nperson(given = \"Arnaud\",\nfamily = \"Droit\",\nrole = \"fnd\"))",
  "Description": "The development of high-throughput sequencing led to\nincreased use of co-expression analysis to go beyong single\nfeature (i.e. gene) focus. We propose GWENA (Gene Whole\nco-Expression Network Analysis) , a tool designed to perform\ngene co-expression network analysis and explore the results in\na single pipeline. It includes functional enrichment of modules\nof co-expressed genes, phenotypcal association, topological\nanalysis and comparison of networks configuration between\nconditions.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
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  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, GeneExpression, Network, Clustering,\nGraphAndNetwork, GeneSetEnrichment, Pathways, Visualization,\nRNASeq, Transcriptomics, mRNAMicroarray, Microarray,\nNetworkEnrichment, Sequencing, GO",
  "BugReports": "https://github.com/Kumquatum/GWENA/issues",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:53:05 UTC",
  "RemoteUrl": "https://github.com/bioc/GWENA",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-20 08:20:27 UTC",
    "User": "root"
  },
  "Author": "Gwenaëlle Lemoine [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4747-1937>),\nMarie-Pier Scott-Boyer [ths],\nArnaud Droit [fnd]",
  "Maintainer": "Gwenaëlle Lemoine <lemoine.gwenaelle@gmail.com>",
  "_user": "bioc",
  "_type": "src",
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  "_expires": "2027-01-28T08:31:44.000Z",
  "_created": "2026-10-20T08:20:27.000Z",
  "_published": "2026-10-20T08:31:46.443Z",
  "_upstream": "https://github.com/bioc/GWENA",
  "_status": "success",
  "_maintainer": {
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    "login": "kumquatum",
    "twitter": "@GwenaelleL_",
    "description": "Medical student (gateway procedure) /\nEx-postdoctoral researcher in networks for auto immune diseases or aging / \nBioinfo-fr.net admin",
    "uuid": 9220458,
    "orcid": "0000-0003-4747-1937"
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    "plot_modules_phenotype",
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      "title": "Determine hub genes based on degree",
      "topics": [
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    },
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      "title": "Determine hub genes inside each module",
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      "title": "Determine hub genes based on connectivity",
      "topics": [
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      "topics": [
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      "title": "Determine if an object is a data_expr in sens of GWENA",
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      "topics": [
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      "title": "Traits data linked to samples in transcriptomic data from the Kuehne et al. publication",
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    {
      "page": "plot_comparison_stats",
      "title": "Heatmap of comparison statistics",
      "topics": [
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    },
    {
      "page": "plot_enrichment",
      "title": "Plot module from bio_enrich",
      "topics": [
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      "title": "Modules merge plot",
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      "title": "Heatmap of modules phenotpic association",
      "topics": [
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      "title": "Muting a function",
      "topics": [
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      "title": "Calculating Z summary",
      "topics": [
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