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  "Title": "GUIDE-seq and PEtag-seq analysis pipeline",
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  "Date": "2024-04-23",
  "Encoding": "UTF-8",
  "Author": "Lihua Julie Zhu, Michael Lawrence, Ankit Gupta, Hervé Pagès ,\nAlper Kucukural, Manuel Garber, Scot A. Wolfe",
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  "Date/Publication": "2026-04-28 12:42:02 UTC",
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      "table": false,
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      "title": "example unique cleavage sites",
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      "page": "GUIDEseq-package",
      "title": "Analysis of GUIDE-seq",
      "topics": [
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        "GUIDEseq"
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    },
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      "page": "annotateOffTargets",
      "title": "Annotate offtargets with gene name",
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    },
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      "topics": [
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      "page": "combineOfftargets",
      "title": "Combine Offtargets",
      "topics": [
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      ]
    },
    {
      "page": "compareSamples",
      "title": "Compare Samples using Fisher's exact test",
      "topics": [
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      ]
    },
    {
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      "topics": [
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      "topics": [
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    },
    {
      "page": "getPeaks",
      "title": "Obtain peaks from GUIDE-seq",
      "topics": [
        "getPeaks"
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    },
    {
      "page": "getUniqueCleavageEvents",
      "title": "Using UMI sequence to obtain the starting sequence library",
      "topics": [
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    {
      "page": "getUsedBarcodes",
      "title": "Create barcodes from the p5 and p7 index used for each sequencing lane",
      "topics": [
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    },
    {
      "page": "GUIDEseqAnalysis",
      "title": "Analysis pipeline for GUIDE-seq dataset",
      "topics": [
        "GUIDEseqAnalysis"
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    },
    {
      "page": "mergePlusMinusPeaks",
      "title": "Merge peaks from plus strand and minus strand",
      "topics": [
        "mergePlusMinusPeaks"
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    },
    {
      "page": "offTargetAnalysisOfPeakRegions",
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      "topics": [
        "offTargetAnalysisOfPeakRegions"
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    },
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      "page": "offTargetAnalysisWithBulge",
      "title": "offTarget Analysis With Bulges Allowed Finding offtargets around peaks from GUIDE-seq or around any given genomic regions with bulges allowed in gRNA or the DNA sequence of offTargets when aligning gRNA and DNA sequences.",
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        "offTargetAnalysisWithBulge"
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      "date": "2026-05-25T06:46:14.000Z",
      "commit": "8a222ef33681b5103d629cf005701f05247ad14f",
      "fileid": "cb4cf5920e1a1a1c8dda081b01414843f2dc927de6e404ac0c4459c91e693ed5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26386924313"
    }
  ]
}