{ "_id": "6a15540dacfb0bcc41d5c80d", "Package": "GSVA", "Version": "2.7.3", "Title": "Gene Set Variation Analysis for Microarray and RNA-Seq Data", "Authors@R": "c(person(\"Robert\", \"Castelo\", role=c(\"aut\", \"cre\"),\ncomment=c(ORCID=\"0000-0003-2229-4508\"),\nemail=\"robert.castelo@upf.edu\"),\nperson(\"Justin\", \"Guinney\", role=\"aut\", email=\"jguinney@gmail.com\"),\nperson(\"Alexey\", \"Sergushichev\", role=\"ctb\", email=\"alsergbox@gmail.com\"),\nperson(\"Pablo Sebastian\", \"Rodriguez\", role=\"ctb\", email=\"pablo.rodriguez.bio2@gmail.com\"),\nperson(\"Axel\", \"Klenk\", role=\"ctb\", email=\"axel.klenk@gmail.com\"),\nperson(\"Chan Zuckerberg Initiative (CZI)\", role=\"fnd\"),\nperson(\"Spanish Ministry of Science, Innovation and Universities (MCIU)\", role=\"fnd\"))", "Description": "Gene Set Variation Analysis (GSVA) is a non-parametric,\nunsupervised method for estimating variation of gene set\nenrichment through the samples of a expression data set. GSVA\nperforms a change in coordinate systems, transforming the data\nfrom a gene by sample matrix to a gene-set by sample matrix,\nthereby allowing the evaluation of pathway enrichment for each\nsample. This new matrix of GSVA enrichment scores facilitates\napplying standard analytical methods like functional\nenrichment, survival analysis, clustering, CNV-pathway analysis\nor cross-tissue pathway analysis, in a pathway-centric manner.", "License": "Artistic-2.0", "VignetteBuilder": "knitr", "URL": "https://github.com/rcastelo/GSVA", "BugReports": "https://github.com/rcastelo/GSVA/issues", "Encoding": "UTF-8", "biocViews": "FunctionalGenomics, Microarray, RNASeq, Pathways,\nGeneSetEnrichment", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.0.0", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libmagick++-dev gsfonts libicu-dev libpng-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-25 20:50:16 UTC", "RemoteUrl": "https://github.com/bioc/GSVA", "RemoteRef": "HEAD", "RemoteSha": "3644b54d300072a7fc6710f30811355b762290e7", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-26 07:51:46 UTC", "User": 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