{ "_id": "6ae71242818c9e3ef6dbb9d7", "Package": "GSE142512", "Type": "Package", "Title": "450K and EPIC Methylation ExperimentHub Data from GEO", "Version": "0.99.2", "Authors@R": "person(\"Paul\", \"Ruiz\", role = c(\"aut\", \"cre\"),\nemail = \"ruizpint@qut.edu.au\",\ncomment = c(ORCID = \"0009-0007-6714-3566\"))", "Description": "Provides ExperimentHub access to processed DNA methylation\nresources derived from GEO accession GSE142512. The resources\ncontain Illumina HumanMethylation450 and Infinium\nMethylationEPIC data represented as RangedSummarizedExperiment\nobjects with beta, M, and CN assays, hg19 genomic ranges, and\nsample phenotype metadata.", "URL": "https://github.com/paulYRP/GSE142512", "BugReports": "https://github.com/paulYRP/GSE142512/issues", "License": "Artistic-2.0", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "biocViews": "ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data,\nMethylationArrayData, MicroarrayData, Tissue", "Encoding": "UTF-8", "NeedsCompilation": "no", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-07 00:23:21 UTC", "RemoteUrl": "https://github.com/bioc/GSE142512", "RemoteRef": "HEAD", "RemoteSha": "3b8630a010324208009b1b4a597e366de6dd78e0", "Packaged": { "Date": "2026-11-01 10:13:57 UTC", "User": "root" }, "Author": "Paul Ruiz [aut, cre] (ORCID: )", "Maintainer": "Paul Ruiz ", "_user": "bioc", "_type": "src", "_file": "GSE142512_0.99.2.tar.gz", "_fileid": "https://r2.ropensci.org/51cf5547f523e4b38f41d48f061c0a43e57378494f0fbac4518ec1c87f056e22", "_filesize": 103774, "_sha256": "51cf5547f523e4b38f41d48f061c0a43e57378494f0fbac4518ec1c87f056e22", "_expires": "2027-02-09T10:19:44.000Z", "_created": "2026-11-01T10:13:57.000Z", "_published": "2026-11-01T10:19:46.592Z", "_upstream": "https://github.com/bioc/GSE142512", "_status": "success", "_maintainer": { "name": "Paul Ruiz", "email": "ruizpint@qut.edu.au", "login": "paulyrp", "linkedin": "in/pyrp", "orcid": "0009-0007-6714-3566", "description": "Biomedical Data Scientist/Biostatistician/Bioinformatician", "uuid": 141361363 }, "_jobs": [ { "job": 124818660083, "time": 154, "config": "bioc-checks", "r": "4.6.2", "check": "NOTE", "artifact": "13079173280" }, { "job": 124818660156, "time": 297, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13079581419" }, { "job": 124818660137, "time": 252, "config": "linux-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13079482692" }, { "job": 124817700242, "time": 254, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13079745657" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 2 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41296259324", "_commit": { "id": "3b8630a010324208009b1b4a597e366de6dd78e0", "author": "Paul Ruiz ", "committer": "Paul Ruiz ", "message": "Bioconductor 0.99.2 Vignette, Installation, and Zenodo version\n", "time": 1788740601 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4.0", "role": "Depends" }, { "package": "ExperimentHub", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "ExperimentHubData", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-27", "n": 1 }, { "week": "2026-31", "n": 2 }, { "week": "2026-32", "n": 1 }, { "week": "2026-37", "n": 1 } ], "_tags": [], "_topics": [ "experimentdata", "experimenthub", "geo", "homo_sapiens_data", "methylationarraydata", "microarraydata", "tissue", "bioconductor", "dna-methylation", "epigenetics", "genomics", "gse142512", "homo-sapiens", "illumina-450k", "illumina-epic", "longitudinal-study", "methylation-array", "peripheral-blood", "rangedsummarizedexperiment", "summarizedexperiment", "type-1-diabetes", "zenodo", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "paulyrp", "count": 5, "uuid": 141361363 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 481, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/paulyrp/gse142512", "_searchresults": 4, "_datapkg": true, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GSE142512.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_cranurl": false, "_exports": [ "GSE142512", "GSE142512_GPL13534_450K", "GSE142512_GPL21145_EPIC" ], "_help": [ { "page": "GSE142512-package", "title": "GSE142512 methylation data in ExperimentHub", "topics": [ "GSE142512-package" ] }, { "page": "GSE142512", "title": "Load GSE142512 ExperimentHub resources", "topics": [ "GSE142512", "GSE142512_GPL13534_450K", "GSE142512_GPL21145_EPIC" ] } ], "_readme": "https://github.com/bioc/GSE142512/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "digest", "dplyr", "ExperimentHub", "fastmap", "filelock", "generics", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_vignettes": [ { "source": "GSE142512.Rmd", "filename": "GSE142512.html", "title": "GSE142512 DNA methylation data", "author": "Paul Ruiz Pinto", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Accessing the resources", "Data availability", "Session information" ], "created": "2026-07-05 22:01:19", "modified": "2026-09-07 00:23:21", "commits": 2 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "gse142512", "_universes": [ "bioc", "paulyrp" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.99.2", "date": "2026-11-01T10:17:59.000Z", "distro": "resolute", "commit": "3b8630a010324208009b1b4a597e366de6dd78e0", "fileid": "https://r2.ropensci.org/6b0ba74beff7bff43d032792e3c605749b9f2c32820aa3cda644e91967c3dee5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41296259324" }, { "r": "4.6.2", "os": "linux", "version": "0.99.2", "date": "2026-11-01T10:17:20.000Z", "distro": "resolute", "commit": "3b8630a010324208009b1b4a597e366de6dd78e0", "fileid": "https://r2.ropensci.org/9df7ae6268dd14e40176e4af5724adbf5eee65e8363e59daa401daf530d01beb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41296259324" } ] }