{ "_id": "6abcc50c99f7aa8c6aa4b7c7", "Package": "GPlinksR", "Type": "Package", "Title": "Building Gene-Peak Network for ATAC-RNA Integration", "Version": "0.99.2", "Authors@R": "c(\nperson(\n\"Xinran\", \"Wang\",\nemail = \"xwang210@usc.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0000-1805-3280\")\n),\nperson(\"Kelly\", \"Street\", email = \"kelly.street@usc.edu\", role = \"ctb\"),\nperson(\"Huaiyu\", \"Mi\", email = \"huaiyumi@usc.edu\", role = \"ctb\"),\nperson(\"Bryan\", \"Queme\", email = \"queme@usc.edu\", role = \"ctb\"))", "Description": "GPlinksR constructs gene-peak regulatory networks for\nATAC-RNA integration by combining enhancer-based,\npromoter-based, and proximity (closest-gene) mappings. The\npackage accepts direct peak and gene vectors as well as\ncontainer-based inputs through a wrapper for common\nBioconductor object classes. Enhancer-gene links are obtained\nfrom the PEREGRINE enhancer-gene datasets provided by AnnoQ,\nwhile promoter and gene coordinates are retrieved from\nEnsDb.Hsapiens.v86.", "License": "MIT + file LICENSE", "URL": "https://github.com/Corawang123/GPlinksR", "BugReports": "https://github.com/Corawang123/GPlinksR/issues", "Encoding": "UTF-8", "biocViews": "GeneExpression, Network, Sequencing, Transcriptomics", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-07-14 21:00:04 UTC", "RemoteUrl": "https://github.com/bioc/GPlinksR", "RemoteRef": "HEAD", "RemoteSha": "6a7555bbae86bfc5e04abcd975f8b200a606efc2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-30 07:41:25 UTC", "User": "root" }, "Author": "Xinran Wang [aut, cre] 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