{ "_id": "6a4f488d21b18e1548500175", "Package": "GOfan", "Type": "Package", "Title": "Sunburst Plot for Enriched Gene Ontology Terms", "Version": "1.1.0", "Authors@R": "c(person(given=\"Jianhong\", family=\"Ou\", email=\"jou@morgridge.org\",\nrole=c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-8652-2488\")),\nperson(given='Kenneth', family='Poss', email='kposs@morgridge.org',\nrole=c('aut', 'fnd')))", "Description": "GOfan provides an intuitive and compact visualization of\nGene Ontology (GO) enrichment results using a sunburst layout\ninspired by SynGO, preserving hierarchical relationships among\nGO terms and allowing color-based encoding of information such\nas p-values or gene counts. By converting complex GO DAGs into\nclean, circular representations, it allows researchers to\nquickly grasp the hierarchical structure and biological\nsignificance of enriched terms. The interactive and\ncustomizable visualizations facilitate exploration of key GO\ncategories, enhancing interpretation and presentation of\nenrichment analyses.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "biocViews": "Visualization, GO, Annotation", "URL": "https://github.com/jianhong/GOfan", "BugReports": "https://github.com/jianhong/GOfan/issues", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:06:29 UTC", "RemoteUrl": "https://github.com/bioc/GOfan", "RemoteRef": "HEAD", "RemoteSha": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-09 07:00:10 UTC", "User": "root" }, "Author": "Jianhong Ou [aut, cre] (ORCID: ),\nKenneth Poss [aut, fnd]", "Maintainer": "Jianhong Ou ", "_user": "bioc", "_type": "src", "_file": "GOfan_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/e95fef525964ea26f8dc4efc0af1a47bfea1e361e9cac84426e5678b22cda840", "_filesize": 430944, "_sha256": "e95fef525964ea26f8dc4efc0af1a47bfea1e361e9cac84426e5678b22cda840", "_expires": "2026-10-17T07:06:51.000Z", "_created": "2026-07-09T07:00:10.000Z", "_published": "2026-07-09T07:06:53.778Z", "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154", "_status": "success", "_upstream": "https://github.com/bioc/GOfan", "_commit": { "id": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381589 }, "_maintainer": { "name": "Jianhong Ou", "email": "jou@morgridge.org", "orcid": "0000-0002-8652-2488" }, "_distro": "resolute", "_jobs": [ { "job": 86058829734, "time": 265, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "8191342432" }, { "job": 86058829765, "time": 296, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8191351956" }, { "job": 86058829779, "time": 347, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8191367069" }, { "job": 86058829723, "time": 203, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8191324858" }, { "job": 86058829760, "time": 249, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8191337684" }, { "job": 86058042092, "time": 307, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8191266008" }, { "job": 86058829712, "time": 192, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8191321954" }, { "job": 86058829824, "time": 177, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8191317792" }, { "job": 86058829792, "time": 196, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8191322787" }, { "job": 86058829830, "time": 174, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8191316670" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "AnnotationDbi", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "GO.db", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "vctrs", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "org.Dr.eg.db", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-45", "n": 7 }, { "week": "2025-46", "n": 1 }, { "week": "2026-04", "n": 1 }, { "week": "2026-10", "n": 1 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23" } ], "_topics": [ "visualization", "go", "annotation" ], "_stars": 1, "_contributors": [ { "user": "jianhong", "count": 10, "uuid": 5640707 }, { "user": "jwokaty", "count": 2, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 193, "source": "https://www.bioconductor.org/packages/stats/bioc/GOfan" }, "_devurl": "https://github.com/jianhong/gofan", "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GOfan.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jianhong/gofan", "_realowner": "bioc", "_cranurl": false, "_exports": [ "filterGraph", "geom_sunburst", "getAncestors", "getGOalias", "getGraph", "ggSunburst", "goGraph", "simplifyDAG", "sunburstGO" ], "_help": [ { "page": "GOfan-package", "title": "Sunburst Plot for Enriched Gene Ontology Terms", "topics": [ "GOfan-package", "GOfan" ] }, { "page": "filterGraph", "title": "Cut the enriched GO terms by the distances from the root after simplify", "topics": [ "filterGraph" ] }, { "page": "geom_sunburst", "title": "Sunburst plot", "topics": [ "geom_sunburst" ] }, { "page": "getAncestors", "title": "Recursive function to extract (ancestor, offspring) pairs", "topics": [ "getAncestors" ] }, { "page": "getGOalias", "title": "Extract all the entrez IDs from a given GO IDs", "topics": [ "getGOalias" ] }, { "page": "getGraph", "title": "Prepare the graph for Sunburst plot", "topics": [ "getGraph" ] }, { "page": "ggSunburst", "title": "Creates sunburst diagram using ggplot2.", "topics": [ "ggSunburst" ] }, { "page": "goGraph", "title": "Creating igraph graphs from ancestor_offspring data frame", "topics": [ "goGraph" ] }, { "page": "simplifyDAG", "title": "Simplify DAG by keeping strongest parent in sub-graphs", "topics": [ "simplifyDAG" ] }, { "page": "sunburstGO", "title": "Sunburst plot for enriched GO term", "topics": [ "sunburstGO" ] } ], "_readme": "https://github.com/bioc/GOfan/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "base64enc", "Biobase", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "bslib", "cachem", "cli", "cpp11", "crayon", "crosstalk", "curl", "data.table", "DBI", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "GO.db", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "igraph", "IRanges", "isoband", "jquerylib", "jsonlite", "KEGGREST", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "openssl", "otel", "pillar", "pkgconfig", "plotly", "png", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "RSQLite", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "XVector", "yaml" ], "_vignettes": [ { "source": "GOfan.Rmd", "filename": "GOfan.html", "title": "GOfan Vignette: GO Enrichment Sunburst Plot", "author": "Jianhong Ou", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Quick start", "SessionInfo" ], "created": "2025-11-06 18:25:09", "modified": "2026-01-22 20:51:48", "commits": 5 } ], "_score": 4.3979400086720375, "_indexed": true, "_nocasepkg": "gofan", "_universes": [ "bioc", "jianhong" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-07-09T07:03:52.000Z", "distro": "resolute", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/eb76fbde86bb1f11b0179d951353a956b0d24556a618ca4669c29f45f73c9fda", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-07-09T07:04:36.000Z", "distro": "resolute", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/311818aa1eb7e479e9c4fbc67162efcea4fadcd8c73d1bbc15f32ed7bac0f484", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-07-09T07:02:33.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/f2cad636d5250621319d00e58bc804c5c2a73d2db2d3cff828fc06b2f32d65d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-07-09T07:02:55.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/4115bfd2f68febf5eefa55d1c3665b8f9fdea5ef65b6801ef28a5447f74f9656", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-07-09T07:03:46.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/f2d386a9a866a21addfe67f2aedfcc6699c11e62b80e33f5555caf080c509a32", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-07-09T07:01:57.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/ff3fab6ca94e02de20abaf0cc1e2a481293fedf56e5a2d42f29010d62d9897e2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-07-09T07:02:19.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/98c59b4146166d1e9a5c9b9b5dd57bb4c683774587163a27c96dc84e2948e6d5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-07-09T07:01:50.000Z", "commit": "544d98d706f2d2aedd8f9caaf28a455c9563d762", "fileid": "https://r2.ropensci.org/b306f30017973d065c22c5d434339bb43dd3d256e9605af08feb296ae0c178f5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28999887154" } ] }