{
  "_id": "6a1ad1821d7bb097a09e2232",
  "Package": "FitHiC",
  "Type": "Package",
  "Title": "Confidence estimation for intra-chromosomal contact maps",
  "Version": "1.39.0",
  "Date": "2017-04-12",
  "Authors@R": "c(person(\"Ferhat\", \"Ay\", role = \"aut\", comment =\n\"Python original, https://noble.gs.washington.edu/proj/fit-hi-c/\"),\nperson(c(\"Timothy\", \"L.\"), \"Bailey\", role = \"aut\"),\nperson(c(\"William\", \"S.\"), \"Noble\", role = \"aut\"),\nperson(\"Ruyu\", \"Tan\", role = c(\"aut\", \"cre\", \"trl\"), comment =\n\"R port\", email = \"rut003@ucsd.edu\"))",
  "Description": "Fit-Hi-C is a tool for assigning statistical confidence\nestimates to intra-chromosomal contact maps produced by\ngenome-wide genome architecture assays such as Hi-C.",
  "License": "GPL (>= 2)",
  "biocViews": "DNA3DStructure, Software",
  "RoxygenNote": "5.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:44:17 UTC",
  "RemoteUrl": "https://github.com/bioc/FitHiC",
  "RemoteRef": "HEAD",
  "RemoteSha": "f0162be6b6925b8877f572082697b746d51d654a",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-30 08:27:58 UTC",
    "User": "root"
  },
  "Author": "Ferhat Ay [aut] (Python original,\nhttps://noble.gs.washington.edu/proj/fit-hi-c/),\nTimothy L. Bailey [aut],\nWilliam S. Noble [aut],\nRuyu Tan [aut, cre, trl] (R port)",
  "Maintainer": "Ruyu Tan <rut003@ucsd.edu>",
  "MD5sum": "e76c56fb8306a464ed216f30aa1cb41e",
  "_user": "bioc",
  "_type": "src",
  "_file": "FitHiC_1.39.0.tar.gz",
  "_fileid": "55eeb8f72af18fc0e39740c84911eed0b34ac717ad747149194716b1a30b767d",
  "_filesize": 28789362,
  "_sha256": "55eeb8f72af18fc0e39740c84911eed0b34ac717ad747149194716b1a30b767d",
  "_created": "2026-05-30T08:27:58.000Z",
  "_published": "2026-05-30T12:01:06.440Z",
  "_jobs": [
    {
      "job": 78636580916,
      "time": 152,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306841057"
    },
    {
      "job": 78636580936,
      "time": 179,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7306843644"
    },
    {
      "job": 78636580933,
      "time": 206,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7306846495"
    },
    {
      "job": 78636580944,
      "time": 173,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306843051"
    },
    {
      "job": 78636580951,
      "time": 233,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306849022"
    },
    {
      "job": 78636580943,
      "time": 175,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7308012112"
    },
    {
      "job": 78636580946,
      "time": 280,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7306854696"
    },
    {
      "job": 78636580949,
      "time": 202,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7308015224"
    },
    {
      "job": 78636580950,
      "time": 238,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306851626"
    },
    {
      "job": 78636376583,
      "time": 243,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306826765"
    },
    {
      "job": 78636580918,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306837786"
    },
    {
      "job": 78636580952,
      "time": 199,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7306845658"
    },
    {
      "job": 78636580922,
      "time": 288,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7306854680"
    },
    {
      "job": 78636580938,
      "time": 215,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306848775"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 10
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/FitHiC",
  "_commit": {
    "id": "f0162be6b6925b8877f572082697b746d51d654a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380257
  },
  "_maintainer": {
    "name": "Ruyu Tan",
    "email": "rut003@ucsd.edu",
    "login": "try1369",
    "description": "",
    "uuid": 15242810
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "fdrtool",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dna3dstructure",
    "software",
    "cpp"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 471,
    "source": "https://www.bioconductor.org/packages/stats/bioc/FitHiC"
  },
  "_mentions": 6,
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FitHiC.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "FitHiC"
  ],
  "_help": [
    {
      "page": "FitHiC",
      "title": "Fit-Hi-C",
      "topics": [
        "FitHiC"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/FitHiC/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "fdrtool",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "fithic.Rmd",
      "filename": "fithic.html",
      "title": "How to Use Fit-Hi-C R Package",
      "author": "Ruyu Tan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install FitHiC",
        "Example I: Yeast (S. cerevisiae) Hi-C data at single restriction enzyme (RE) resolution without bias values",
        "Example II: Human ESC Hi-C data at 40kb fixed size resolution (only chr1) without bias values",
        "Example III: Human ESC Hi-C data at 10 consecutive RE resolution (only chr1) without bias values",
        "Example IV: Human ESC Hi-C data at 40kb fixed size resolution (only chr1) WITH bias values",
        "Example V: Human MCF7 HiC-Pro data at 5Mb resolution WITH bias values",
        "References",
        "Prepare Data",
        "Support"
      ],
      "created": "2016-10-07 08:32:34",
      "modified": "2018-08-30 17:48:37",
      "commits": 6
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": true,
  "_nocasepkg": "fithic",
  "_universes": [
    "bioc",
    "try1369"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:11.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "57ae83b5ce021a9c4fec1dc218994108f8b5ae9a00b19b538f8cf1ef4f9169e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:31.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "496c4938ef7457c7485eb9792e8848e8d7c5acf0fcb0022ae82972b576465b17",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "ec27d7750ed0ea5d91f52937fcc5a87bcb4b2d638f97843007d034caf1e36526",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:53.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "6abe5d3972cd08dd97e141abaa6533d1672aacfd47f379001e370793c9c6dbf3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-05-30T11:58:23.000Z",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "d27d76c8b7da6f4c43b6315eb425ed643730f0bcf8c07178a37e0779898d2baa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-05-30T08:31:02.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "393e48117c2ab0026f7f20f58946aa6a4c6c7381b9b177fe95c7d6659b57e587",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-05-30T11:58:34.000Z",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "01ae7c3b9713454f340a76e4fbad4fefedbd0d6081e5a7b9ca49e99940ac8638",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:48.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "42cc61e29e9079a19da31d794d4dc46d6f0588a2a809e66a6adf5b130004a84e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.39.0",
      "date": "2026-05-30T08:30:10.000Z",
      "arch": "emscripten",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "aa0c862c0a57b391aaa0bfda8b57c00ff7839d9653a50626464f4f8ff54df83d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-05-30T08:29:20.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "8fbacc504e7abc9f82c5cf5b35a894827aad67c112881bc8c72ea63215bdda74",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-05-30T08:29:47.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "3a778f3c9897b6a95ff65204b0eedaffbe6c4a9923987a85d02eeb8b289d03c6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-05-30T08:29:43.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "2900a3ecc790c5d8d8688a85dcf14ddc10dfd65116b080579949b2b4d3113d98",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679158534"
    }
  ]
}