{
  "_id": "6a5b0a5a9baadeef8ab4a824",
  "Package": "FitHiC",
  "Type": "Package",
  "Title": "Confidence estimation for intra-chromosomal contact maps",
  "Version": "1.39.0",
  "Date": "2017-04-12",
  "Authors@R": "c(person(\"Ferhat\", \"Ay\", role = \"aut\", comment =\n\"Python original, https://noble.gs.washington.edu/proj/fit-hi-c/\"),\nperson(c(\"Timothy\", \"L.\"), \"Bailey\", role = \"aut\"),\nperson(c(\"William\", \"S.\"), \"Noble\", role = \"aut\"),\nperson(\"Ruyu\", \"Tan\", role = c(\"aut\", \"cre\", \"trl\"), comment =\n\"R port\", email = \"rut003@ucsd.edu\"))",
  "Description": "Fit-Hi-C is a tool for assigning statistical confidence\nestimates to intra-chromosomal contact maps produced by\ngenome-wide genome architecture assays such as Hi-C.",
  "License": "GPL (>= 2)",
  "biocViews": "DNA3DStructure, Software",
  "RoxygenNote": "5.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:44:17 UTC",
  "RemoteUrl": "https://github.com/bioc/FitHiC",
  "RemoteRef": "HEAD",
  "RemoteSha": "f0162be6b6925b8877f572082697b746d51d654a",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-18 05:01:31 UTC",
    "User": "root"
  },
  "Author": "Ferhat Ay [aut] (Python original,\nhttps://noble.gs.washington.edu/proj/fit-hi-c/),\nTimothy L. Bailey [aut],\nWilliam S. Noble [aut],\nRuyu Tan [aut, cre, trl] (R port)",
  "Maintainer": "Ruyu Tan <rut003@ucsd.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "FitHiC_1.39.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/1d92dcdf17b34c527f0a4d6080984dffcd2ec83dd15f645f69b403bb6d469751",
  "_filesize": 28789815,
  "_sha256": "1d92dcdf17b34c527f0a4d6080984dffcd2ec83dd15f645f69b403bb6d469751",
  "_expires": "2026-10-26T05:08:39.000Z",
  "_created": "2026-07-18T05:01:31.000Z",
  "_published": "2026-07-18T05:08:42.460Z",
  "_bioccheck": {
    "error": 0,
    "warning": 3,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394",
  "_status": "success",
  "_upstream": "https://github.com/bioc/FitHiC",
  "_commit": {
    "id": "f0162be6b6925b8877f572082697b746d51d654a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380257
  },
  "_maintainer": {
    "name": "Ruyu Tan",
    "email": "rut003@ucsd.edu",
    "login": "try1369",
    "description": "",
    "uuid": 15242810
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 88046032070,
      "time": 129,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8425653199"
    },
    {
      "job": 88046032095,
      "time": 221,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8425670477"
    },
    {
      "job": 88046032124,
      "time": 246,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8425674232"
    },
    {
      "job": 88046032076,
      "time": 192,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425665185"
    },
    {
      "job": 88046032077,
      "time": 252,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425675086"
    },
    {
      "job": 88046032092,
      "time": 142,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8425655495"
    },
    {
      "job": 88046032085,
      "time": 376,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8425696798"
    },
    {
      "job": 88046032080,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425655293"
    },
    {
      "job": 88046032093,
      "time": 273,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425678843"
    },
    {
      "job": 88045639721,
      "time": 253,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425629770"
    },
    {
      "job": 88046032059,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8425653149"
    },
    {
      "job": 88046032087,
      "time": 196,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8425665425"
    },
    {
      "job": 88046032068,
      "time": 187,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8425663995"
    },
    {
      "job": 88046032073,
      "time": 180,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425662568"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "fdrtool",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dna3dstructure",
    "software",
    "cpp"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 447,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 424,
    "source": "https://www.bioconductor.org/packages/stats/bioc/FitHiC"
  },
  "_mentions": 6,
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FitHiC.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "FitHiC"
  ],
  "_help": [
    {
      "page": "FitHiC",
      "title": "Fit-Hi-C",
      "topics": [
        "FitHiC"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/FitHiC/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "fdrtool",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "fithic.Rmd",
      "filename": "fithic.html",
      "title": "How to Use Fit-Hi-C R Package",
      "author": "Ruyu Tan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install FitHiC",
        "Example I: Yeast (S. cerevisiae) Hi-C data at single restriction enzyme (RE) resolution without bias values",
        "Example II: Human ESC Hi-C data at 40kb fixed size resolution (only chr1) without bias values",
        "Example III: Human ESC Hi-C data at 10 consecutive RE resolution (only chr1) without bias values",
        "Example IV: Human ESC Hi-C data at 40kb fixed size resolution (only chr1) WITH bias values",
        "Example V: Human MCF7 HiC-Pro data at 5Mb resolution WITH bias values",
        "References",
        "Prepare Data",
        "Support"
      ],
      "created": "2016-10-07 08:32:34",
      "modified": "2018-08-30 17:48:37",
      "commits": 6
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": true,
  "_nocasepkg": "fithic",
  "_universes": [
    "bioc",
    "try1369"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-18T05:04:36.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/2ef0f2f2ff1caa398867b8c74bfe10bc56187c720eaf8b95a30e059c1bd3209e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-18T05:04:48.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/e9f03d934e27240f20bb2a26dbcc2856a20ff35130a33442b968a45924de3f12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-18T05:04:04.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/237e4e574a94d7297a38b8b142c7d6fa4f6a27bf7309eae90dd6fbbdbdbe4d29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-07-18T05:04:48.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/3117e4c7521686397bde7bd7e10f64a6860000ee0f1e5cbb4598dd1a72adaa19",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-18T05:03:03.000Z",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/a69bd29cb009216d55afce7a77c9107634d6792dd7df8b83004d3028cb513495",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-18T05:05:12.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/2ccec2ffa2f650d41a36114c9162d6488a430ccdf37a7ca8f3125254772cac8d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-18T05:03:04.000Z",
      "arch": "aarch64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/5398440411407ac1f642d0d5f725ca8b4b57e52c9ab1ad7283ea9041dfff6995",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-07-18T05:04:17.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/5571008562850c3ccab2a5d534e1c86346a4c547448e0de50880147964c6693c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.39.0",
      "date": "2026-07-18T05:03:54.000Z",
      "arch": "emscripten",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/bce739700785a0f16308c13573c4b48982233d459e00f627ec40daa2021aea85",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-18T05:02:51.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/596e0cb8bcbccb410716030e2e24b6c4bc0e7561a87520d6e5136c7b9105327f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-18T05:02:47.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/15fbfd5e71564bd2522310dd2c43ca2ff95efdb2906854bb678026303eb38391",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-07-18T05:02:47.000Z",
      "arch": "x86_64",
      "commit": "f0162be6b6925b8877f572082697b746d51d654a",
      "fileid": "https://r2.ropensci.org/576fa48a349d8e4a8bef31bfc4b28360606e6fc7d513b31a3c6d6fee589ec59f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631416394"
    }
  ]
}