{ "_id": "6a5b08c39baadeef8ab4a6d9", "Package": "EventPointer", "Type": "Package", "Title": "An effective identification of alternative splicing events using\njunction arrays and RNA-Seq data", "Version": "3.21.0", "Authors@R": "c(person(\"Juan Pablo\",\"Romero\",role=c(\"aut\"),email = \"jpromero@ceit.es\"),\nperson(\"Juan A.\", \"Ferrer-Bonsoms\",role=c(\"aut\",\"cre\"),email = \"jafhernandez@tecnun.es\"),\nperson(\"Pablo\", \"Sacristan\",role=c(\"aut\"),email = \"a904719@alumni.unav.es\"),\nperson(\"Ander\", \"Muniategui\",role=c(\"aut\")),\nperson(\"Fernando\", \"Carazo\",role=c(\"aut\")),\nperson(\"Ander\", \"Aramburu\",role=c(\"aut\")),\nperson(\"Angel\", \"Rubio\",role=c(\"aut\"),email = \"arubio@tecnun.es\")\n)", "Description": "EventPointer is an R package to identify alternative\nsplicing events that involve either simple (case-control\nexperiment) or complex experimental designs such as time course\nexperiments and studies including paired-samples. The algorithm\ncan be used to analyze data from either junction arrays\n(Affymetrix Arrays) or sequencing data (RNA-Seq). In the\nlatter, EventPointer can work with annotated splicing events or\ncan build a splicing graph from the RNA-Seq reads and then\nidentify new and specific alternative splicing events. The\nsoftware returns a data.frame with the detected alternative\nsplicing events: gene name, type of event (cassette,\nalternative 3',...,etc), genomic position, statistical\nsignificance and increment of the percent spliced in (Delta\nPSI) for all the events. The algorithm can generate a series of\nfiles to visualize the detected alternative splicing events in\nIGV. This eases the interpretation of results and the design of\nprimers for standard PCR validation.", "License": "Artistic-2.0", "LazyData": "true", "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "biocViews": "AlternativeSplicing, DifferentialSplicing, mRNAMicroarray,\nRNASeq, Transcription, Sequencing, TimeCourse, ImmunoOncology", "VignetteBuilder": "knitr", "Url": "https://github.com/jpromeror/EventPointer", "BugReports": "https://github.com/jpromeror/EventPointer/issues", "Config/pak/sysreqs": "libglpk-dev make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:45:11 UTC", "RemoteUrl": "https://github.com/bioc/EventPointer", "RemoteRef": "HEAD", "RemoteSha": "afef15f39ef22750f57744b58a9b1e1bad79fba1", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-18 04:46:36 UTC", "User": "root" }, "Author": "Juan Pablo Romero [aut],\nJuan A. 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