{ "_id": "6a4992f46d67900babdfc8c7", "Package": "EasyCellType", "Title": "Annotate cell types for scRNA-seq data", "Version": "1.15.0", "Authors@R": "c(\nperson(given=\"Ruoxing\", family=\"Li\", email=\"ruoxingli@outlook.com\", role=c(\"aut\", \"cre\", \"ctb\")),\nperson(given=\"Ziyi\", family=\"Li\", email=\"zli16@mdanderson.org\", role=\"ctb\"))", "Description": "We developed EasyCellType which can automatically examine\nthe input marker lists obtained from existing software such as\nSeurat over the cell markerdatabases. Two quantification\napproaches to annotate cell types are provided: Gene set\nenrichment analysis (GSEA) and a modified versio of Fisher's\nexact test. The function presents annotation recommendations in\ngraphical outcomes: bar plots for each cluster showing\ncandidate cell types, as well as a dot plot summarizing the top\n5 significant annotations for each cluster.", "License": "Artistic-2.0", "RoxygenNote": "7.3.1", "Encoding": "UTF-8", "biocViews": "SingleCell, Software, GeneExpression, GeneSetEnrichment", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:58:53 UTC", "RemoteUrl": "https://github.com/bioc/EasyCellType", "RemoteRef": "HEAD", "RemoteSha": "71d2b988eac3c25bd253c91977c40c4ccf018df0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 22:58:16 UTC", "User": "root" }, "Author": "Ruoxing Li [aut, cre, ctb],\nZiyi Li [ctb]", "Maintainer": "Ruoxing Li ", "_user": "bioc", "_type": "src", "_file": "EasyCellType_1.15.0.tar.gz", "_fileid": "https://r2.ropensci.org/9e1de54aeb2e8728aa971274f66f3a4ca0d2b63ca2dfe46bb4d7cb4cecd892a1", "_filesize": 3617665, "_sha256": "9e1de54aeb2e8728aa971274f66f3a4ca0d2b63ca2dfe46bb4d7cb4cecd892a1", "_expires": "2026-10-12T23:10:42.000Z", "_created": "2026-07-04T22:58:16.000Z", "_published": "2026-07-04T23:10:44.461Z", "_bioccheck": { "error": 0, "warning": 2, "note": 7 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28722218832", "_status": "success", "_upstream": "https://github.com/bioc/EasyCellType", "_commit": { "id": "71d2b988eac3c25bd253c91977c40c4ccf018df0", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381133 }, "_maintainer": { "name": "Ruoxing Li", "email": "ruoxingli@outlook.com" }, "_distro": "resolute", "_jobs": [ { "job": 85173977220, "time": 280, "config": 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