{ "_id": "6a1ae0191d7bb097a09ec972", "Package": "EasyCellType", "Title": "Annotate cell types for scRNA-seq data", "Version": "1.15.0", "Authors@R": "c(\nperson(given=\"Ruoxing\", family=\"Li\", email=\"ruoxingli@outlook.com\", role=c(\"aut\", \"cre\", \"ctb\")),\nperson(given=\"Ziyi\", family=\"Li\", email=\"zli16@mdanderson.org\", role=\"ctb\"))", "Description": "We developed EasyCellType which can automatically examine\nthe input marker lists obtained from existing software such as\nSeurat over the cell markerdatabases. Two quantification\napproaches to annotate cell types are provided: Gene set\nenrichment analysis (GSEA) and a modified versio of Fisher's\nexact test. The function presents annotation recommendations in\ngraphical outcomes: bar plots for each cluster showing\ncandidate cell types, as well as a dot plot summarizing the top\n5 significant annotations for each cluster.", "License": "Artistic-2.0", "RoxygenNote": "7.3.1", "Encoding": "UTF-8", "biocViews": "SingleCell, Software, GeneExpression, GeneSetEnrichment", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:58:53 UTC", "RemoteUrl": "https://github.com/bioc/EasyCellType", "RemoteRef": "HEAD", "RemoteSha": "71d2b988eac3c25bd253c91977c40c4ccf018df0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:19:11 UTC", "User": "root" }, "Author": "Ruoxing Li [aut, cre, ctb],\nZiyi Li [ctb]", "Maintainer": "Ruoxing Li ", 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