{ "_id": "6a1ad3c11d7bb097a09e3c92", "Package": "ELViS", "Title": "An R Package for Estimating Copy Number Levels of Viral Genome\nSegments Using Base-Resolution Read Depth Profile", "Version": "1.5.0", "Authors@R": "c(\nperson(\"Hyo Young\", \"Choi\", , \"hyoyoung.choi@uthsc.edu\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7627-8493\")),\nperson(\"Jin-Young\", \"Lee\", , \"jlee307@uthsc.edu\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-5366-7488\")),\nperson(\"Xiaobei\", \"Zhao\", , \"xiaobei_zhao@uthsc.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5277-0846\")),\nperson(\"Jeremiah R.\", \"Holt\", , \"jholt41@uthsc.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5201-5015\")),\nperson(\"Katherine A.\", \"Hoadley\", , \"hoadley@med.unc.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-1216-477X\")),\nperson(\"D. 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Neil Hayes", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Motivation for submitting to Bioconductor", "Installation", "Run Example", "Data preparation", "Virus Reference Genome File", "BAM Files", "Generate Raw Read Depth Matrix with Toy Examples", "Filtering Out Low Depth Samples", "Run ELViS using the Filtered Depth Matrix", "Plotting Figures", "sessionInfo" ], "created": "2025-02-28 21:54:08", "modified": "2025-09-05 16:38:12", "commits": 8 } ], "_score": 4.812913356642856, "_indexed": true, "_nocasepkg": "elvis", "_universes": [ "bioc", "jyleebioinfo", "hyochoi" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.5.0", "date": "2026-05-30T08:40:18.000Z", "distro": "noble", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "511cb5918143b574ee433414b0a052ef901841e15a70ec8714a7bafde22038ca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.6.0", "os": "linux", "version": "1.5.0", "date": "2026-05-30T08:40:53.000Z", "distro": "noble", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "6de64660ea8633ac8489fcb7f7818f7aab1cb5f3dc1cf88b2661d5a1680f0dff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.5.3", "os": "mac", "version": "1.5.0", "date": "2026-05-30T12:07:04.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "56cdf13bf3ef2eb8efb012896718ec1f002fc4d658346587e30b16ab82d57c4a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.6.0", "os": "mac", "version": "1.5.0", "date": "2026-05-30T12:06:36.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "84fa3f0c4073ca7c089ffbd30c298ab363b993b30c5d12db94c1b1b09c375ae2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.6.0", "os": "wasm", "version": "1.5.0", "date": "2026-05-30T08:40:21.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "5e9224856228cb1c31062d21f1877151dd2d1058637f1d98da35a531a9ae4123", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.7.0", "os": "win", "version": "1.5.0", "date": "2026-05-30T08:44:30.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "15633375ef35dc3fa0cf5f0f86423cd483cdcc4e47dc56ef9585c66cedcc8f06", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.5.3", "os": "win", "version": "1.5.0", "date": "2026-05-30T08:43:36.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "a14ba7e8fe140106c3d550d13dd085c40dc701b6a631d3cc4a136b7aa7f1c6b2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" }, { "r": "4.6.0", "os": "win", "version": "1.5.0", "date": "2026-05-30T08:39:20.000Z", "commit": "a9187858545e52b23d75add2b4aa09646d7b6163", "fileid": "fb0f255052f14162788e2b9220e2c9ecae537d7eac03791f52b526566b255621", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679289648" } ] }