{
  "_id": "6a4f70d421b18e1548501e4a",
  "Package": "DynDoc",
  "Title": "Dynamic document tools",
  "Version": "1.91.0",
  "Author": "R. Gentleman, Jeff Gentry",
  "Description": "A set of functions to create and interact with dynamic\ndocuments and vignettes.",
  "Maintainer": "Bioconductor Package Maintainer\n<maintainer@bioconductor.org>",
  "License": "Artistic-2.0",
  "LazyLoad": "Yes",
  "Collate": "tangleToR.R DynDoc.R vignetteClass.R vigList.R vignetteCode.R\nzzz.R",
  "biocViews": "ReportWriting, Infrastructure",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:29:53 UTC",
  "RemoteUrl": "https://github.com/bioc/DynDoc",
  "RemoteRef": "HEAD",
  "RemoteSha": "627d30c31ebbea359249aec077bebb651f6b0f6d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-09 09:53:29 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "DynDoc_1.91.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/706fa2e18987239fdef77d0aebb04b176aa805ed0646f27bafce36a53699594c",
  "_filesize": 134549,
  "_sha256": "706fa2e18987239fdef77d0aebb04b176aa805ed0646f27bafce36a53699594c",
  "_expires": "2026-10-17T09:58:42.000Z",
  "_created": "2026-07-09T09:53:29.000Z",
  "_published": "2026-07-09T09:58:44.547Z",
  "_bioccheck": {
    "error": 3,
    "warning": 2,
    "note": 14
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887",
  "_status": "success",
  "_upstream": "https://github.com/bioc/DynDoc",
  "_commit": {
    "id": "627d30c31ebbea359249aec077bebb651f6b0f6d",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379393
  },
  "_maintainer": {
    "name": "Bioconductor Package Maintainer",
    "email": "maintainer@bioconductor.org",
    "login": "bioconductor-bot",
    "description": "",
    "uuid": 11681645
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 86090168193,
      "time": 139,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8195097629"
    },
    {
      "job": 86090168265,
      "time": 149,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8195101488"
    },
    {
      "job": 86090168221,
      "time": 269,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8195149244"
    },
    {
      "job": 86090168256,
      "time": 120,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8195089004"
    },
    {
      "job": 86090168283,
      "time": 72,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8195072297"
    },
    {
      "job": 86089399533,
      "time": 236,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8195042086"
    },
    {
      "job": 86090168196,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8195085191"
    },
    {
      "job": 86090168281,
      "time": 77,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8195074475"
    },
    {
      "job": 86090168244,
      "time": 67,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8195070499"
    },
    {
      "job": 86090168234,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8195075743"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 6,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.91.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.90.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "reportwriting",
    "infrastructure"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 2362,
    "source": "https://www.bioconductor.org/packages/stats/bioc/DynDoc"
  },
  "_searchresults": 9,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DynDoc.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".transformNames",
    "baseVigDesc",
    "chunk",
    "chunk<-",
    "chunkList",
    "chunkName",
    "chunks",
    "codeChunk",
    "codeChunks",
    "editVignetteCode",
    "evalChunk",
    "evalEnv",
    "getAllCodeChunks",
    "getChunk",
    "getDepends",
    "getKeywords",
    "getOptions",
    "getPkgVigList",
    "getRequires",
    "getSuggests",
    "getVigInfo",
    "getVigInfoNames",
    "getVignette",
    "getVignetteCode",
    "getVignetteHeader",
    "hasVigHeaderField",
    "indexEntry",
    "numChunks",
    "numOptions",
    "path",
    "pdfPath",
    "setChunk<-",
    "show",
    "summary",
    "SweaveOptions",
    "tangleToR",
    "tangleToRFinish",
    "tangleToRRuncode",
    "tangleToRSetup",
    "transformVigInfoLine",
    "vigPackage",
    "vigPkgVersion"
  ],
  "_help": [
    {
      "page": "chunkList-class",
      "title": "Class \"chunkList\"",
      "topics": [
        "chunkList",
        "chunkList-class",
        "chunks",
        "chunks,chunkList-method",
        "evalChunk,chunkList-method",
        "evalEnv,chunkList-method",
        "getAllCodeChunks",
        "getAllCodeChunks,chunkList-method",
        "getChunk",
        "getChunk,chunkList-method",
        "numChunks",
        "numChunks,chunkList-method",
        "setChunk",
        "setChunk<-",
        "setChunk<-,chunkList-method",
        "show,chunkList-method",
        "summary,chunkList-method"
      ]
    },
    {
      "page": "codeChunk-class",
      "title": "Class \"codeChunk\"",
      "topics": [
        "chunk",
        "chunk,codeChunk-method",
        "chunk<-",
        "chunk<-,codeChunk-method",
        "chunkName",
        "chunkName,codeChunk-method",
        "codeChunk",
        "codeChunk-class",
        "evalChunk,codeChunk-method",
        "getOptions,codeChunk-method",
        "show,codeChunk-method",
        "SweaveOptions,codeChunk-method"
      ]
    },
    {
      "page": "DynDoc-class",
      "title": "A Class For Dynamic Documents",
      "topics": [
        "chunks,DynDoc-method",
        "codeChunks",
        "codeChunks,DynDoc-method",
        "DynDoc-class",
        "evalChunk,DynDoc-method",
        "getChunk,DynDoc-method",
        "getDepends,DynDoc-method",
        "getKeywords",
        "getKeywords,DynDoc-method",
        "getRequires",
        "getRequires,DynDoc-method",
        "getSuggests",
        "getSuggests,DynDoc-method",
        "indexEntry",
        "indexEntry,DynDoc-method",
        "numChunks,DynDoc-method",
        "path,DynDoc-method",
        "pdfPath",
        "pdfPath,DynDoc-method",
        "setChunk<-,DynDoc-method",
        "show,DynDoc-method",
        "summary,DynDoc-method"
      ]
    },
    {
      "page": "getPkgVigList",
      "title": "A function to retrieve a listing of package vignettes",
      "topics": [
        "baseVigDesc",
        "getPkgVigList",
        "getVigInfo",
        "getVigInfoNames",
        "print.pkgFileList",
        "transformVigInfoLine"
      ]
    },
    {
      "page": "getVignette",
      "title": "A function to handle vignette files",
      "topics": [
        "getVignette"
      ]
    },
    {
      "page": "getVignetteCode",
      "title": "Functionality to manage code chunks from a vignette",
      "topics": [
        "editVignetteCode",
        "getVignetteCode"
      ]
    },
    {
      "page": "getVignetteHeader",
      "title": "A function to read vignette header information",
      "topics": [
        "getVignetteHeader",
        "hasVigHeaderField"
      ]
    },
    {
      "page": "SweaveOptions-class",
      "title": "Class \"SweaveOptions\", a class to handle options in Sweave",
      "topics": [
        "codeChunk,SweaveOptions-method",
        "getOptions",
        "getOptions,SweaveOptions-method",
        "numOptions",
        "numOptions,SweaveOptions-method",
        "show,SweaveOptions-method",
        "SweaveOptions",
        "SweaveOptions-class"
      ]
    },
    {
      "page": "tangleToR",
      "title": "An Sweave driver to retrieve code chunks",
      "topics": [
        "tangleToR",
        "tangleToRFinish",
        "tangleToRRuncode",
        "tangleToRSetup"
      ]
    },
    {
      "page": "Vignette-class",
      "title": "A Class To Represent Vignettes",
      "topics": [
        "Vignette-class",
        "vigPackage,Vignette-method",
        "vigPkgVersion",
        "vigPkgVersion,Vignette-method"
      ]
    },
    {
      "page": "vignetteCode-class",
      "title": "Class \"vignetteCode\"",
      "topics": [
        "chunkList,vignetteCode-method",
        "chunks,vignetteCode-method",
        "evalChunk",
        "evalChunk,vignetteCode-method",
        "evalEnv",
        "evalEnv,vignetteCode-method",
        "getChunk,vignetteCode-method",
        "getDepends",
        "getDepends,vignetteCode-method",
        "numChunks,vignetteCode-method",
        "path",
        "path,vignetteCode-method",
        "setChunk<-,vignetteCode-method",
        "show,vignetteCode-method",
        "summary,vignetteCode-method",
        "vignetteCode",
        "vignetteCode-class",
        "vigPackage",
        "vigPackage,vignetteCode-method"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 3.9295823940447834,
  "_indexed": true,
  "_nocasepkg": "dyndoc",
  "_universes": [
    "bioc",
    "bioconductor-bot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.91.0",
      "date": "2026-07-09T09:56:03.000Z",
      "distro": "resolute",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/052aa24240dc3f30c41f64e096fcff31541d6deff0d1063e706f96d8ac14a259",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.91.0",
      "date": "2026-07-09T09:58:05.000Z",
      "distro": "resolute",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/3f5f99e3bfdf3181c6b0e2ecb93441a0c59c5b2fc840facaecf8133764331a06",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.91.0",
      "date": "2026-07-09T09:55:29.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/b92e6aa79a9218f70a14b9693bd75e3e62ef8487324caf0ca024d7acdba58573",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.91.0",
      "date": "2026-07-09T09:54:50.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/4fd245ae74f2c1ce331a71d0148faa330fb97764c01caf204ce8921e34ec5829",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.91.0",
      "date": "2026-07-09T09:55:31.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/d1408636dc7e3e6b44f04062f5f83bfd39574b2a645324290d8e1ae6885ce1e6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.91.0",
      "date": "2026-07-09T09:54:47.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/a01760e0ed3b6ed0b3d5549365f3be3e60e9a2de3ae06b8c60f0de78076738e5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.91.0",
      "date": "2026-07-09T09:54:40.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/982b04cc07ad01b001d909531c9f02b302f36a6ab4763c2c72181c4a0a1f16d8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.91.0",
      "date": "2026-07-09T09:54:49.000Z",
      "commit": "627d30c31ebbea359249aec077bebb651f6b0f6d",
      "fileid": "https://r2.ropensci.org/380bd3e3e1d42c15874658fe7e59849d50a40fe6a39259ad202bddfb4e6c8195",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29009512887"
    }
  ]
}