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  "Title": "Probabilistic association of DEGs to CREs from differential data",
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    "collapseDegCreToGene",
    "convDegCreResListToCreGeneScoreGR",
    "convertDegCreDataFrame",
    "convertdegCreResListToGInteraction",
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    "getDistBinNullAssocProb",
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    "optimizeAlphaDegCre",
    "plotBrowserDegCre",
    "plotDegCreAssocProbVsDist",
    "plotDegCreBinHeuristic",
    "plotExpectedAssocsPerDeg",
    "runDegCre"
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      "title": "DegCre input data for examples.",
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      "file": "DexNR3C1.rda",
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      "page": "calcAssocProbOR",
      "title": "Calculate Odds-ratio",
      "topics": [
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      ]
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      "page": "calcRawAssocProbOR",
      "title": "Calculate Raw Association Probability Odds Ratio (OR)",
      "topics": [
        "calcRawAssocProbOR"
      ]
    },
    {
      "page": "collapseDegCreToGene",
      "title": "Collapse DegCre associations to a single TSS per gene",
      "topics": [
        "collapseDegCreToGene"
      ]
    },
    {
      "page": "convDegCreResListToCreGeneScoreGR",
      "title": "Convert a degCreResList to a creGeneScoreGR",
      "topics": [
        "convDegCreResListToCreGeneScoreGR"
      ]
    },
    {
      "page": "convertDegCreDataFrame",
      "title": "Convert DegCre Results List to DataFrame",
      "topics": [
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      ]
    },
    {
      "page": "convertdegCreResListToGInteraction",
      "title": "Convert DegCre Results List to GInteractions Object",
      "topics": [
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      ]
    },
    {
      "page": "DegCre",
      "title": "DegCre",
      "topics": [
        "DegCre-package",
        "DegCre"
      ]
    },
    {
      "page": "degCrePRAUC",
      "title": "Calculate PR AUC for DegCre results.",
      "topics": [
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      ]
    },
    {
      "page": "DexNR3C1",
      "title": "DegCre input data for examples.",
      "topics": [
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      ]
    },
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      "title": "Get Associations and Distances Between Genomic Regions",
      "topics": [
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      ]
    },
    {
      "page": "getDistBinNullAssocProb",
      "title": "Calculate Null Association Probability for Each Distance Bin",
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      ]
    },
    {
      "page": "getExpectAssocPerDEG",
      "title": "Get Expected Associations per DEG",
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      ]
    },
    {
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      "title": "Run DegCre with DEG alpha optimization.",
      "topics": [
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      ]
    },
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      "page": "plotBrowserDegCre",
      "title": "Make Browser Plots from DegCre Results",
      "topics": [
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      ]
    },
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      "topics": [
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      ]
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      "title": "Plot DegCre Bin Algorithm Statistics",
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    {
      "page": "plotExpectedAssocsPerDeg",
      "title": "Plot Histogram of Expected Associations per DEG",
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      "page": "runDegCre",
      "title": "Generate DegCre associations",
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