{ "_id": "6a17e365acfb0bcc41da02af", "Package": "DaMiRseq", "Type": "Package", "Date": "2021-11-20", "Title": "Data Mining for RNA-seq data: normalization, feature selection\nand classification", "Version": "2.25.0", "Author": "Mattia Chiesa , Luca\nPiacentini ", "Maintainer": "Mattia Chiesa ", "Description": "The DaMiRseq package offers a tidy pipeline of data mining\nprocedures to identify transcriptional biomarkers and exploit\nthem for both binary and multi-class classification purposes.\nThe package accepts any kind of data presented as a table of\nraw counts and allows including both continous and factorial\nvariables that occur with the experimental setting. A series of\nfunctions enable the user to clean up the data by filtering\ngenomic features and samples, to adjust data by identifying and\nremoving the unwanted source of variation (i.e. batches and\nconfounding factors) and to select the best predictors for\nmodeling. Finally, a \"stacking\" ensemble learning technique is\napplied to build a robust classification model. Every step\nincludes a checkpoint that the user may exploit to assess the\neffects of data management by looking at diagnostic plots, such\nas clustering and heatmaps, RLE boxplots, MDS or correlation\nplot.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "biocViews": "Sequencing, RNASeq, Classification, ImmunoOncology", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "cmake libglpk-dev make default-jdk libbz2-dev\nlibicu-dev libjpeg-dev liblzma-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:45:17 UTC", "RemoteUrl": "https://github.com/bioc/DaMiRseq", "RemoteRef": "HEAD", "RemoteSha": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-28 06:28:06 UTC", "User": "root" }, "MD5sum": "6ad6cc60684076b3ab9ea13aa2aef0be", "_user": "bioc", "_type": "src", "_file": "DaMiRseq_2.25.0.tar.gz", "_fileid": "d870939cd6e8154fe2de41ad241da79bffee951eb1b17f4094f88401be01e117", "_filesize": 4641217, "_sha256": "d870939cd6e8154fe2de41ad241da79bffee951eb1b17f4094f88401be01e117", "_created": "2026-05-28T06:28:06.000Z", "_published": "2026-05-28T06:40:37.813Z", "_jobs": [ { "job": 78236181331, "time": 279, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7259213302" }, { "job": 78236181366, "time": 659, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7259307598" }, { "job": 78236181349, "time": 606, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7259295156" }, { "job": 78236181399, "time": 314, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7259230081" }, { "job": 78236181370, "time": 407, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7259250911" }, { "job": 78234955838, "time": 633, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7259142880" }, { "job": 78236181350, "time": 232, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7259201129" }, { "job": 78236181371, "time": 525, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7259274769" }, { "job": 78236181358, "time": 441, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7259254396" }, { "job": 78236181404, "time": 486, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7259265496" } ], "_bioccheck": { "error": 1, "warning": 2, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/DaMiRseq", "_commit": { "id": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380317 }, "_maintainer": { "name": "Mattia Chiesa", "email": "mattia.chiesa@cardiologicomonzino.it", "login": "bioinfomonzino", "description": "", "uuid": 25501676 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "SummarizedExperiment", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "DESeq2", "role": "Imports" }, { "package": "limma", "role": "Imports" }, { "package": "EDASeq", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "sva", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "pheatmap", "role": "Imports" }, { "package": "FactoMineR", "role": "Imports" }, { "package": "corrplot", "role": "Imports" }, { "package": "randomForest", "role": "Imports" }, { "package": "e1071", "role": "Imports" }, { "package": "caret", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "plsVarSel", "role": "Imports" }, { "package": "kknn", "role": "Imports" }, { "package": "FSelector", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "ineq", "role": "Imports" }, { "package": "arm", "role": "Imports" }, { "package": "pls", "role": "Imports" }, { "package": "RSNNS", "role": "Imports" }, { "package": "edgeR", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "Seqinfo", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-17", "n": 4 }, { "week": "2026-18", "n": 3 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.25.0", "bioc": "3.24" }, { "branch": "release", "version": "2.24.0", "bioc": "3.23" } ], "_topics": [ "sequencing", "rnaseq", "classification", "immunooncology", "openjdk" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 493, "source": "https://www.bioconductor.org/packages/stats/bioc/DaMiRseq" }, "_mentions": 7, "_searchresults": 12, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DaMiRseq.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "DaMiR.Allplot", "DaMiR.Clustplot", "DaMiR.corrplot", "DaMiR.EnsembleLearning", "DaMiR.EnsembleLearning2cl", "DaMiR.EnsembleLearningNcl", "DaMiR.EnsL_Predict", "DaMiR.EnsL_Test", "DaMiR.EnsL_Train", "DaMiR.FBest", "DaMiR.FReduct", "DaMiR.FSelect", "DaMiR.FSort", "DaMiR.goldenDice", "DaMiR.iTSadjust", "DaMiR.iTSnorm", "DaMiR.makeSE", "DaMiR.MDSplot", "DaMiR.ModelSelect", "DaMiR.normalization", "DaMiR.sampleFilt", "DaMiR.SV", "DaMiR.SVadjust", "DaMiR.transpose" ], "_datasets": [ { "name": "data_min", "title": "Example gene-expression dataset for DaMiRseq package", "object": "data_min", "class": [ "data.frame" ], "fields": [ "ENSG00000121207", "ENSG00000160808", "ENSG00000136535", "ENSG00000152208", "ENSG00000250584", "ENSG00000005059", "ENSG00000134184", "ENSG00000272198", "ENSG00000185519", "ENSG00000175077", "ENSG00000120756", "ENSG00000226939", "ENSG00000170011", "ENSG00000172554", "ENSG00000178602", "ENSG00000115194", "ENSG00000203685", "ENSG00000228971", "ENSG00000187730", "ENSG00000163362", "ENSG00000169064", "ENSG00000163209", "ENSG00000138678", "ENSG00000164120", "ENSG00000183090", "ENSG00000226887", "ENSG00000164128", "ENSG00000124374", "ENSG00000082497", "ENSG00000163347", "ENSG00000163576", "ENSG00000144230", "ENSG00000189292", "ENSG00000168658", "ENSG00000246375", "ENSG00000204588", "ENSG00000134207", "ENSG00000009709", "ENSG00000198691", "ENSG00000185149", "ENSG00000174567", "ENSG00000272755", "ENSG00000134853", "ENSG00000073792", "ENSG00000162595", "ENSG00000164089", "ENSG00000237940", "ENSG00000159674", "ENSG00000177144", "ENSG00000157005", "ENSG00000136546", "ENSG00000077092", "ENSG00000143119", "ENSG00000128655", "ENSG00000174145", "ENSG00000185477", "ENSG00000163046", "ENSG00000117650", "ENSG00000142871", "ENSG00000047457", "ENSG00000049089", "ENSG00000156219", "ENSG00000153266", "ENSG00000117472", "ENSG00000270605", "ENSG00000225630", "ENSG00000153820", "ENSG00000183856", "ENSG00000116035", "ENSG00000225889", "ENSG00000180914", "ENSG00000144331", "ENSG00000163395", "ENSG00000152527", "ENSG00000231826", "ENSG00000163833", "ENSG00000118194", "ENSG00000150551", "ENSG00000115457", "ENSG00000130940", "ENSG00000163909", "ENSG00000115350", "ENSG00000234177", "ENSG00000132321", "ENSG00000115112", "ENSG00000174514", "ENSG00000197747" ], "rows": 40, "table": true, "tojson": true }, { "name": "data_norm", "title": "A dataset with a normalized matrix to test several DaMiRseq functions: sample data are a subset of Genotype-Tissue Expression (GTEx) RNA-Seq database (dbGap Study Accession: phs000424.v6.p1)", "object": "data_norm", "class": [ "SummarizedExperiment" ], "fields": [], "table": false, "tojson": false }, { "name": "data_reduced", "title": "Example gene-expression dataset for DaMiRseq package", "object": "data_reduced", "class": [ "data.frame" ], "fields": [ "ENSG00000144152", "ENSG00000162374", "ENSG00000121207", "ENSG00000160808", "ENSG00000203865", "ENSG00000136535", "ENSG00000152208", "ENSG00000250584", "ENSG00000115641", "ENSG00000005059", "ENSG00000134184", "ENSG00000272198", "ENSG00000152953", "ENSG00000169006", "ENSG00000185519", "ENSG00000175077", "ENSG00000120756", "ENSG00000226939", "ENSG00000170011", "ENSG00000172554", "ENSG00000178602", "ENSG00000115194", "ENSG00000203685", "ENSG00000228971", "ENSG00000187730", "ENSG00000156966", "ENSG00000163362", "ENSG00000169064", "ENSG00000131378", "ENSG00000163209", "ENSG00000138678", "ENSG00000164120", "ENSG00000183090", "ENSG00000226887", "ENSG00000228214", "ENSG00000164128", "ENSG00000124374", "ENSG00000082497", "ENSG00000144550", "ENSG00000163347", "ENSG00000163576", "ENSG00000272078", "ENSG00000160781", "ENSG00000144230", "ENSG00000189292", "ENSG00000168658", "ENSG00000246375", "ENSG00000186212", "ENSG00000169213", "ENSG00000169432", "ENSG00000204588", "ENSG00000134207", "ENSG00000125462", "ENSG00000138100", "ENSG00000009709", "ENSG00000112902", "ENSG00000116147", "ENSG00000163820", "ENSG00000114200", "ENSG00000198691", "ENSG00000185149", "ENSG00000174567", "ENSG00000272755", "ENSG00000134853", "ENSG00000073792", "ENSG00000162595", "ENSG00000138378", "ENSG00000164089", "ENSG00000260246", "ENSG00000237940", "ENSG00000159674", "ENSG00000177144", "ENSG00000144407", "ENSG00000114948", "ENSG00000128045", "ENSG00000157005", "ENSG00000144285", "ENSG00000136546", "ENSG00000196189", "ENSG00000145451", "ENSG00000077092", "ENSG00000143119", "ENSG00000128655", "ENSG00000117013", "ENSG00000163399", "ENSG00000157087", "ENSG00000174145", "ENSG00000185477", "ENSG00000116106", "ENSG00000163046", "ENSG00000118733", "ENSG00000117650", "ENSG00000142871", "ENSG00000047457", "ENSG00000049089", "ENSG00000156219", "ENSG00000153266", "ENSG00000162783", "ENSG00000119042", "ENSG00000117472", "ENSG00000225953", "ENSG00000270605", "ENSG00000225630", "ENSG00000153820", "ENSG00000231858", "ENSG00000162989", "ENSG00000145087", "ENSG00000183856", "ENSG00000204060", "ENSG00000116035", "ENSG00000168243", "ENSG00000225889", "ENSG00000168314", "ENSG00000180914", "ENSG00000144331", "ENSG00000163395", "ENSG00000163793", "ENSG00000143061", "ENSG00000152527", "ENSG00000231826", "ENSG00000163833", "ENSG00000176887", "ENSG00000118194", "ENSG00000150551", "ENSG00000115457", "ENSG00000143473", "ENSG00000196542", "ENSG00000130940", "ENSG00000117152", "ENSG00000188011", "ENSG00000163909", "ENSG00000115350", "ENSG00000232973", "ENSG00000234177", "ENSG00000132321", "ENSG00000115112", "ENSG00000174514", "ENSG00000197747" ], "rows": 40, "table": true, "tojson": true }, { "name": "data_relief", "title": "Example ranking dataset for DaMiRseq package", "object": "data_relief", "class": [ "data.frame" ], "fields": [ "RReliefF", "scaled.RReliefF" ], "rows": 87, "table": true, "tojson": true }, { "name": "df", "title": "Example gene-expression dataset for DaMiRseq package", "object": "df", "class": [ "DFrame" ], "fields": [], "table": false, "tojson": false }, { "name": "SE", "title": "Example gene-expression dataset for DaMiRseq package", "object": "SE", "class": [ "SummarizedExperiment" ], "fields": [], "table": false, "tojson": false }, { "name": "selected_features", "title": "Example gene-expression dataset for DaMiRseq package", "object": "selected_features", "class": [ "data.frame" ], "fields": [ "ENSG00000250584", "ENSG00000185519", "ENSG00000170011", "ENSG00000131378", "ENSG00000082497", "ENSG00000136546", "ENSG00000232973" ], "rows": 40, "table": true, "tojson": true }, { "name": "SEtest_norm", "title": "A sample dataset with a normalized count matrix for \"testthat\" functions.", "object": "SEtest_norm", "class": [ "SummarizedExperiment" ], "fields": [], "table": false, "tojson": false }, { "name": "sv", "title": "Example Surrogate Variables dataset for DaMiRseq package", "object": "sv", "class": [ "matrix", "array" ], "fields": {}, "rows": 40, "table": true, "tojson": true } ], "_help": [ { "page": "DaMiR.Allplot", "title": "Quality assessment and visualization of expression data", "topics": [ "DaMiR.Allplot" ] }, { "page": "DaMiR.Clustplot", "title": "Expression data clustering and heatmap", "topics": [ "DaMiR.Clustplot" ] }, { "page": "DaMiR.corrplot", "title": "Correlation Plot", "topics": [ "DaMiR.corrplot" ] }, { "page": "DaMiR.EnsembleLearning", "title": "Build Classifier using 'Staking' Ensemble Learning strategy.", "topics": [ "DaMiR.EnsembleLearning" ] }, { "page": "DaMiR.EnsembleLearning2cl", "title": "Build a Binary Classifier using 'Staking' Learning strategy.", "topics": [ "DaMiR.EnsembleLearning2cl" ] }, { "page": "DaMiR.EnsembleLearningNcl", "title": "Build a Multi-Class Classifier using 'Staking' Learning strategy.", "topics": [ "DaMiR.EnsembleLearningNcl" ] }, { "page": "DaMiR.EnsL_Predict", "title": "Predict new samples class", "topics": [ "DaMiR.EnsL_Predict" ] }, { "page": "DaMiR.EnsL_Test", "title": "Test Binary Classifiers", "topics": [ "DaMiR.EnsL_Test" ] }, { "page": "DaMiR.EnsL_Train", "title": "Train a Binary Classifier using 'Staking' Learning strategy.", "topics": [ "DaMiR.EnsL_Train" ] }, { "page": "DaMiR.FBest", "title": "Select best predictors to build Classification Model", "topics": [ "DaMiR.FBest" ] }, { "page": "DaMiR.FReduct", "title": "Remove highly correlated features, based on feature-per-feature correlation.", "topics": [ "DaMiR.FReduct" ] }, { "page": "DaMiR.FSelect", "title": "Feature selection for classification", "topics": [ "DaMiR.FSelect" ] }, { "page": "DaMiR.FSort", "title": "Order features by importance, using RReliefF filter", "topics": [ "DaMiR.FSort" ] }, { "page": "DaMiR.goldenDice", "title": "Generate a Number to Set Seed", "topics": [ "DaMiR.goldenDice" ] }, { "page": "DaMiR.iTSadjust", "title": "Batch correction of normalized Independent Test Set", "topics": [ "DaMiR.iTSadjust" ] }, { "page": "DaMiR.iTSnorm", "title": "Normalization of Independent Test Set", "topics": [ "DaMiR.iTSnorm" ] }, { "page": "DaMiR.makeSE", "title": "Import RNA-Seq count data and variables", "topics": [ "DaMiR.makeSE" ] }, { "page": "DaMiR.MDSplot", "title": "Plot multidimentional scaling (MDS)", "topics": [ "DaMiR.MDSplot" ] }, { "page": "DaMiR.ModelSelect", "title": "Select the best classification model", "topics": [ "DaMiR.ModelSelect" ] }, { "page": "DaMiR.normalization", "title": "Filter non Expressed and 'Hypervariant' features and Data Normalization", "topics": [ "DaMiR.normalization" ] }, { "page": "DaMiR.sampleFilt", "title": "Filter Samples by Mean Correlation Distance Metric", "topics": [ "DaMiR.sampleFilt" ] }, { "page": "DaMiR.SV", "title": "Identification of Surrogate Variables", "topics": [ "DaMiR.SV" ] }, { "page": "DaMiR.SVadjust", "title": "Remove variable effects from expression data", "topics": [ "DaMiR.SVadjust" ] }, { "page": "DaMiR.transpose", "title": "Matrix transposition and replacement of '.' and '-' special characters", "topics": [ "DaMiR.transpose" ] }, { "page": "data_min", "title": "Example gene-expression dataset for DaMiRseq package", "topics": [ "data_min" ] }, { "page": "data_norm", "title": "A dataset with a normalized matrix to test several DaMiRseq functions: sample data are a subset of Genotype-Tissue Expression (GTEx) RNA-Seq database (dbGap Study Accession: phs000424.v6.p1)", "topics": [ "data_norm" ] }, { "page": "data_reduced", "title": "Example gene-expression dataset for DaMiRseq package", "topics": [ "data_reduced" ] }, { "page": "data_relief", "title": "Example ranking dataset for DaMiRseq package", "topics": [ "data_relief" ] }, { "page": "df", "title": "Example gene-expression dataset for DaMiRseq package", "topics": [ "df" ] }, { "page": "SE", "title": "Example gene-expression dataset for DaMiRseq package", "topics": [ "SE" ] }, { "page": "selected_features", "title": "Example gene-expression dataset for DaMiRseq package", "topics": [ "selected_features" ] }, { "page": "SEtest_norm", "title": "A sample dataset with a normalized count matrix for \"testthat\" functions.", "topics": [ "SEtest_norm" ] }, { "page": "sv", "title": "Example Surrogate Variables dataset for DaMiRseq package", "topics": [ "sv" ] } ], "_readme": "https://github.com/bioc/DaMiRseq/raw/HEAD/README.md", "_rundeps": [ "abind", "annotate", "AnnotationDbi", "arm", "aroma.light", "askpass", "backports", "base64enc", "bdsmatrix", "BH", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocIO", "BiocManager", "BiocParallel", "biomaRt", "Biostrings", "bit", "bit64", "bitops", "blob", "boot", "broom", "bslib", "cachem", "car", "carData", "caret", "checkmate", "cigarillo", "class", "cli", "clock", "cluster", "coda", "codetools", "colorspace", "corrplot", "cowplot", "cpp11", "crayon", "crosstalk", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "deldir", "Deriv", "DESeq2", "diagram", "digest", "doBy", "dplyr", "DT", "e1071", "EDASeq", "edgeR", "ellipse", "emmeans", "entropy", "estimability", "evaluate", "FactoMineR", "farver", "fastmap", "filelock", "flashClust", "fontawesome", "foreach", "forecast", "foreign", "formatR", "Formula", "fracdiff", "fs", "FSelector", "futile.logger", "futile.options", "future", "future.apply", "genalg", "genefilter", "generics", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "ggrepel", "globals", "glue", "gower", "gridExtra", "gtable", "hardhat", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "httr", "httr2", "hwriter", "igraph", "ineq", "interp", "ipred", "IRanges", "isoband", "iterators", "jpeg", "jquerylib", "jsonlite", "KEGGREST", "KernSmooth", "kknn", "knitr", "labeling", "lambda.r", "later", "lattice", "latticeExtra", "lava", "lazyeval", "leaps", "lifecycle", "limma", "listenv", "lme4", "lmtest", "locfit", "lubridate", "magrittr", "MASS", "Matrix", "MatrixGenerics", "MatrixModels", "matrixStats", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "ModelMetrics", "modelr", "multcompView", "mvtnorm", "nlme", "nloptr", "nnet", "numDeriv", "openssl", "otel", "parallelly", "pbkrtest", "pheatmap", "pillar", "pkgconfig", "pls", "plsVarSel", "plyr", "png", "praznik", "prettyunits", "pROC", "prodlim", "progress", "progressr", "promises", "proxy", "purrr", "pwalign", "quantreg", "R.methodsS3", "R.oo", "R.utils", "R6", "randomForest", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RCurl", "Rdpack", "recipes", "reformulas", "reshape2", "restfulr", "Rhtslib", "rJava", "rjson", "rlang", "rmarkdown", "rpart", "Rsamtools", "RSNNS", "RSQLite", "rstudioapi", "rtracklayer", "RWeka", "RWekajars", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "scatterplot3d", "Seqinfo", "shape", "ShortRead", "snow", "SparseArray", "SparseM", "sparsevctrs", "SQUAREM", "statmod", "stringi", "stringr", "SummarizedExperiment", "survival", "sva", "sys", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "tinytex", "tzdb", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "XML", "xml2", "xtable", "XVector", "yaml", "zoo" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.10+7-1~24.04", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_vignettes": [ { "source": "DaMiRseq.Rnw", "filename": "DaMiRseq.pdf", "title": "Data Mining for RNA-seq data: normalization, features selection and classification - DaMiRseq package", "engine": "knitr::knitr", "headings": [], "created": "2017-02-09 10:49:53", "modified": "2026-04-27 14:25:29", "commits": 27 } ], "_score": 5.577491799837226, "_indexed": true, "_nocasepkg": "damirseq", "_universes": [ "bioc", "bioinfomonzino" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.25.0", "date": "2026-05-28T06:35:32.000Z", "distro": "noble", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "50a9f848124da8c774e892e28d150b0d29f8f459da48578a3db45dede8c7b042", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.6.0", "os": "linux", "version": "2.25.0", "date": "2026-05-28T06:33:39.000Z", "distro": "noble", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "7f2fb0f58eee4c461779bdb2ddb1eccc1abbf220b489f5f431a7db700214ad55", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.5.3", "os": "mac", "version": "2.25.0", "date": "2026-05-28T06:31:16.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "94368cd4f7b08531768ee92c4a0b0d402be2c6ef4bb85ce141f417d233ddbed1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.6.0", "os": "mac", "version": "2.25.0", "date": "2026-05-28T06:31:37.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "f14a0ce05e6da9d9252550d99346a0d021e356e68f5480065bb68114efa14ee5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.6.0", "os": "wasm", "version": "2.25.0", "date": "2026-05-28T06:32:56.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "1e787877106386c39cbc6c99d3a84664506668c99d29cfc12f1687fa8c618194", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.7.0", "os": "win", "version": "2.25.0", "date": "2026-05-28T06:32:17.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "bc22b66f9ac6211bb6d68138a839c2e93b3d2b1a02f097e2806642dd5995b30f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.5.3", "os": "win", "version": "2.25.0", "date": "2026-05-28T06:30:39.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "272a6611d2b3f952efe5db7d1153a96c58392fd4efb44e263703c8780a421028", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" }, { "r": "4.6.0", "os": "win", "version": "2.25.0", "date": "2026-05-28T06:31:14.000Z", "commit": "89e0c2e4158c20e33904ef5495f0d9e5fc3dc8fe", "fileid": "791d78b74b022d880e68ef6307f7c827b3617fa8ad5e66ec77e83d6355a0604f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26558286500" } ] }