{
  "_id": "6ad73a79d556c3a3418a6fe2",
  "Package": "DNAfusion",
  "Title": "Identification of gene fusions using paired-end sequencing",
  "Version": "1.15.0",
  "biocViews": "TargetedResequencing, Genetics, GeneFusionDetection,\nSequencing",
  "Authors@R": "c(person(given = \"Christoffer Trier\", family = \"Maansson\", , email = \"ctm@clin.au.dk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3071-3437\")),\nperson(given = \"Emma Roger\", family = \"Andersen\", , email = \"201907412@post.au.dk\", role = c(\"ctb\", \"rev\")),\nperson(given = \"Maiken Parm\", family = \"Ulhoi\", , email = \"maiken@oncology.au.dk\", role = \"dtc\"),\nperson(given = \"Peter\", family = \"Meldgaard\", , email = \"petemeld@rm.dk\", role = \"dtc\"),\nperson(given = \"Boe Sandahl\", family = \"Sorensen\", , email = \"b.sorensen@clin.au.dk\", role = c(\"rev\", \"fnd\")))",
  "Description": "DNAfusion can identify gene fusions such as EML4-ALK based\non paired-end sequencing results. This package was developed\nusing position deduplicated BAM files generated with the AVENIO\nOncology Analysis Software. These files are made using the\nAVENIO ctDNA surveillance kit and Illumina Nextseq 500\nsequencing. This is a targeted hybridization NGS approach and\nincludes ALK-specific but not EML4-specific probes.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
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  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/CTrierMaansson/DNAfusion/issues",
  "URL": "https://github.com/CTrierMaansson/DNAfusion",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:59:21 UTC",
  "RemoteUrl": "https://github.com/bioc/DNAfusion",
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    "Date": "2026-10-20 09:48:12 UTC",
    "User": "root"
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  "Author": "Christoffer Trier Maansson [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3071-3437>),\nEmma Roger Andersen [ctb, rev],\nMaiken Parm Ulhoi [dtc],\nPeter Meldgaard [dtc],\nBoe Sandahl Sorensen [rev, fnd]",
  "Maintainer": "Christoffer Trier Maansson <ctm@clin.au.dk>",
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  "_type": "src",
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  "_expires": "2027-01-28T09:55:03.000Z",
  "_created": "2026-10-20T09:48:12.000Z",
  "_published": "2026-10-20T09:55:05.211Z",
  "_upstream": "https://github.com/bioc/DNAfusion",
  "_status": "failure",
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    "email": "ctm@clin.au.dk",
    "login": "ctriermaansson",
    "twitter": "@triermaansson1",
    "description": "I am a postdoctoral researcher at Aarhus University Hospital, specializing in the development and application of liquid biopsy techniques for cancer research. ",
    "uuid": 108919744,
    "orcid": "0000-0002-3071-3437"
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    "genetics",
    "genefusiondetection",
    "sequencing",
    "bioconductor-package",
    "circulating-tumor-dna",
    "gene-fusion",
    "liquid-biopsy",
    "next-generation-sequencing",
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    "EML4_ALK_detection",
    "EML4_sequence",
    "find_variants",
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    {
      "page": "ALK_sequence",
      "title": "Identification of ALK breakpoint bases",
      "topics": [
        "ALK_sequence"
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      "title": "EML4-ALK breakpoint",
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      "title": "Read depth at breakpoint",
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