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  "Package": "DNABarcodes",
  "Type": "Package",
  "Title": "A tool for creating and analysing DNA barcodes used in Next\nGeneration Sequencing multiplexing experiments",
  "Version": "1.43.0",
  "Date": "2014-07-23",
  "Author": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Maintainer": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Description": "The package offers a function to create DNA barcode sets\ncapable of correcting insertion, deletion, and substitution\nerrors. Existing barcodes can be analysed regarding their\nminimal, maximal and average distances between barcodes.\nFinally, reads that start with a (possibly mutated) barcode can\nbe demultiplexed, i.e., assigned to their original reference\nbarcode.",
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  "VignetteBuilder": "knitr",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:35 UTC",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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    "create.dnabarcodes.ashlock",
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    "create.dnabarcodes.conway",
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      "title": "Mock Set of Mutated Reads",
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      "file": "mutatedReads.rda",
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      ],
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      "object": "supplierSet",
      "file": "supplierSet.rda",
      "class": [
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      ],
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    {
      "page": "DNABarcodes-package",
      "title": "Create and analyse DNA barcode sets that are capable of error correction.",
      "concept": [
        "Error Correction",
        "DNA Barcodes",
        "Sample Tags",
        "Levenshtein Distance",
        "Hamming Distance",
        "Next Generation Sequencing",
        "Multiplexing",
        "Demultiplexing"
      ],
      "topics": [
        "DNABarcodes-package",
        "DNABarcodes"
      ]
    },
    {
      "page": "analyse.barcodes",
      "title": "Analyse Sets of Barcode",
      "topics": [
        "analyse.barcodes"
      ]
    },
    {
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      "title": "Calculate distances between each barcode pair of a barcode set.",
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        "barcode.set.distances"
      ]
    },
    {
      "page": "create.dnabarcodes",
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      "topics": [
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        "create.dnabarcodes.ashlock",
        "create.dnabarcodes.clique",
        "create.dnabarcodes.conway",
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      "topics": [
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      "title": "Demultiplex a set of reads.",
      "topics": [
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      ]
    },
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      ]
    },
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      ]
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        "Using DNABarcodes",
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        "Sets with Larger Number of Correctable Errors",
        "Sets of DNA Barcodes Capable of Correcting Insertions, Deletions, and Substitutions",
        "Applying Different Filters",
        "Subsetting an Existing Set of DNA Barcodes",
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      "created": "2015-09-28 14:38:37",
      "modified": "2015-09-28 14:38:37",
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