{
  "_id": "6a21658fcd65a98ecbd352da",
  "Package": "DNABarcodes",
  "Type": "Package",
  "Title": "A tool for creating and analysing DNA barcodes used in Next\nGeneration Sequencing multiplexing experiments",
  "Version": "1.43.0",
  "Date": "2014-07-23",
  "Author": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Maintainer": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Description": "The package offers a function to create DNA barcode sets\ncapable of correcting insertion, deletion, and substitution\nerrors. Existing barcodes can be analysed regarding their\nminimal, maximal and average distances between barcodes.\nFinally, reads that start with a (possibly mutated) barcode can\nbe demultiplexed, i.e., assigned to their original reference\nbarcode.",
  "License": "GPL-2",
  "VignetteBuilder": "knitr",
  "biocViews": "Preprocessing, Sequencing",
  "NeedsCompilation": "yes",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:35 UTC",
  "RemoteUrl": "https://github.com/bioc/DNABarcodes",
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    "User": "root"
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  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26948242678",
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  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/DNABarcodes",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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  "_selfowned": true,
  "_usedby": 0,
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "source": "https://www.bioconductor.org/packages/stats/bioc/DNABarcodes"
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  "_searchresults": 45,
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    "extra/citation.json",
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    "extra/NEWS.html",
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  "_cranurl": false,
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    "create.dnabarcodes",
    "create.dnabarcodes.ashlock",
    "create.dnabarcodes.clique",
    "create.dnabarcodes.conway",
    "create.dnabarcodes.sampling",
    "create.pool",
    "demultiplex",
    "distance"
  ],
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      "name": "mutatedReads",
      "title": "Mock Set of Mutated Reads",
      "object": "mutatedReads",
      "file": "mutatedReads.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
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      "name": "supplierSet",
      "title": "Mock Set of DNA Barcodes",
      "object": "supplierSet",
      "file": "supplierSet.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "DNABarcodes-package",
      "title": "Create and analyse DNA barcode sets that are capable of error correction.",
      "concept": [
        "Error Correction",
        "DNA Barcodes",
        "Sample Tags",
        "Levenshtein Distance",
        "Hamming Distance",
        "Next Generation Sequencing",
        "Multiplexing",
        "Demultiplexing"
      ],
      "topics": [
        "DNABarcodes-package",
        "DNABarcodes"
      ]
    },
    {
      "page": "analyse.barcodes",
      "title": "Analyse Sets of Barcode",
      "topics": [
        "analyse.barcodes"
      ]
    },
    {
      "page": "barcode.set.distances",
      "title": "Calculate distances between each barcode pair of a barcode set.",
      "topics": [
        "barcode.set.distances"
      ]
    },
    {
      "page": "create.dnabarcodes",
      "title": "Create a set of DNA barcodes using one of several heuristic methods.",
      "topics": [
        "create.dnabarcodes",
        "create.dnabarcodes.ashlock",
        "create.dnabarcodes.clique",
        "create.dnabarcodes.conway",
        "create.dnabarcodes.sampling"
      ]
    },
    {
      "page": "create.pool",
      "title": "Create a pool of barcode candidates.",
      "topics": [
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      ]
    },
    {
      "page": "demultiplex",
      "title": "Demultiplex a set of reads.",
      "topics": [
        "demultiplex"
      ]
    },
    {
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      "title": "Calculate distance between two barcodes.",
      "topics": [
        "distance"
      ]
    },
    {
      "page": "mutatedReads",
      "title": "Mock Set of Mutated Reads",
      "topics": [
        "mutatedReads"
      ]
    },
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      "topics": [
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      ]
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      "headings": [
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        "Using DNABarcodes",
        "Creating a Pristine Set of DNA Barcodes",
        "Sets with Larger Number of Correctable Errors",
        "Sets of DNA Barcodes Capable of Correcting Insertions, Deletions, and Substitutions",
        "Applying Different Filters",
        "Subsetting an Existing Set of DNA Barcodes",
        "Demultiplexing",
        "Analysing a Set of DNA Barcodes",
        "Distance Metrics",
        "Set Generation Heuristics",
        "Configuration of Ashlock Heuristic"
      ],
      "created": "2015-09-28 14:38:37",
      "modified": "2015-09-28 14:38:37",
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