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    "ce_get_markers",
    "ce_get_panels",
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    "colnames",
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    "cytobank2GatingSet",
    "cytobankExperiment",
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    "fj_ws_get_sample_groups",
    "fj_ws_get_samples",
    "flowjo_to_gatingset",
    "gatingset_to_cytobank",
    "gatingset_to_flowjo",
    "GatingSet2cytobank",
    "GatingSet2flowJo",
    "getKeywords",
    "getSampleGroups",
    "getSamples",
    "gs_compare_cytobank_counts",
    "markernames",
    "open_cytobank_experiment",
    "open_diva_xml",
    "open_flowjo_xml",
    "openDiva",
    "parseWorkspace",
    "pData",
    "sampleNames",
    "show"
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      "page": "addCustomInfo",
      "title": "add customInfo nodes to each gate node and add BooleanAndGates",
      "topics": [
        "addCustomInfo"
      ]
    },
    {
      "page": "ce_get_channels",
      "title": "Extract channels from cytobank_experiment",
      "topics": [
        "ce_get_channels"
      ]
    },
    {
      "page": "ce_get_compensations",
      "title": "Obtain the spillover matrices for the samples in a Cytobank experiment",
      "topics": [
        "ce_get_compensations"
      ]
    },
    {
      "page": "ce_get_markers",
      "title": "Extract markers from cytobank_experiment",
      "topics": [
        "ce_get_markers"
      ]
    },
    {
      "page": "ce_get_panels",
      "title": "Obtain counts of the number of samples associated with each marker panel in a Cytobank experiment",
      "topics": [
        "ce_get_panels"
      ]
    },
    {
      "page": "ce_get_samples",
      "title": "Obtain a mapping between the samples and marker panels in a Cytobank experiment",
      "topics": [
        "ce_get_samples"
      ]
    },
    {
      "page": "ce_get_transformations",
      "title": "Obtain the transformations associated with each channel in a Cytobank experiment",
      "topics": [
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      ]
    },
    {
      "page": "compensate-GatingSet-graphGML-method",
      "title": "compensate a GatingSet based on the compensation information stored in graphGML object",
      "topics": [
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      ]
    },
    {
      "page": "constructTree",
      "title": "Reconstruct the population tree from the GateSets",
      "topics": [
        "constructTree"
      ]
    },
    {
      "page": "cytobank_experiment-methods",
      "title": "Methods for interacting with cytobank_experiment objects",
      "topics": [
        "colnames,cytobank_experiment-method",
        "cytobank_experiment-methods",
        "markernames,cytobank_experiment-method",
        "pData,cytobank_experiment-method",
        "print.cytobank_experiment",
        "sampleNames,cytobank_experiment-method"
      ]
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      "title": "A wrapper that parses the gatingML and FCS files (or 'cytobank_experiment' object) into GatingSet",
      "topics": [
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        "cytobank_to_gatingset",
        "cytobank_to_gatingset.cytobank_experiment",
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      "title": "Deprecated functions in package 'CytoML'.",
      "topics": [
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    {
      "page": "diva_get_samples",
      "title": "Get a table of samples from a FACSDiva workspace",
      "topics": [
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        "diva_get_sample_groups"
      ]
    },
    {
      "page": "diva_to_gatingset",
      "title": "Parse a FACSDiva Workspace",
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        "parseWorkspace,diva_workspace-method"
      ]
    },
    {
      "page": "diva_workspace-class",
      "title": "An R representation of a BD FACSDiva workspace",
      "topics": [
        "diva_workspace-class",
        "show,diva_workspace-method"
      ]
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      "page": "extend",
      "title": "extend the gate to the minimum and maximum limit of both dimensions based on the bounding information.",
      "topics": [
        "extend",
        "extend.ellipsoidGate",
        "extend.polygonGate",
        "extend.rectangleGate"
      ]
    },
    {
      "page": "fj_ws_get_keywords",
      "title": "Get Keywords",
      "topics": [
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        "getKeywords"
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    {
      "page": "fj_ws_get_sample_groups",
      "title": "Get a table of sample groups from a flowJo workspace",
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        "getSampleGroups"
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    },
    {
      "page": "fj_ws_get_samples",
      "title": "Get a list of samples from a flowJo workspace",
      "topics": [
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        "getSamples"
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    },
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      "page": "flowjo_workspace-class",
      "title": "An R representation of a flowJo workspace.",
      "topics": [
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        "show,flowjo_workspace-method"
      ]
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    {
      "page": "gatingset_to_cytobank",
      "title": "Convert a GatingSet to a Cytobank-compatible gatingML",
      "topics": [
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        "gatingset_to_cytobank"
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      "title": "Convert a GatingSet to flowJo workspace",
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        "gatingset_to_flowjo"
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      "page": "getChildren-graphGML-character-method",
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      "page": "getCompensationMatrices.graphGML",
      "title": "Extract compensation from graphGML object.",
      "topics": [
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      "topics": [
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      "topics": [
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    {
      "page": "gs_compare_cytobank_counts",
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      "topics": [
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      "page": "matchPath",
      "title": "Given the leaf node, try to find out if a collection of nodes can be matched to a path in a graph(tree) by the bottom-up searching",
      "topics": [
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      "page": "open_cytobank_experiment",
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      "topics": [
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        "open_cytobank_experiment"
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      "topics": [
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      "page": "open_flowjo_xml",
      "title": "Open/Close a flowJo workspace",
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      "page": "parse.gateInfo",
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      "page": "flowjo_to_gatingset",
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        "parseWorkspace",
        "parseWorkspace,flowjo_workspace-method"
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    },
    {
      "page": "plot-graphGML-missing-method",
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      "page": "range.GatingHierarchy",
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