{ "_id": "6ae751a19ceaa78f20099cf5", "Package": "CytoMDS", "Title": "Low Dimensions projection of cytometry samples", "Version": "1.9.3", "Authors@R": "c(person(given = \"Philippe\",\nfamily = \"Hauchamps\",\nrole = c(\"aut\", \"cre\"),\nemail = \"philippe.hauchamps@uclouvain.be\",\ncomment = c(ORCID = \"0000-0003-2865-1852\")),\nperson(given = \"Laurent\", family = \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")),\nperson(given = \"Dan\",\nfamily = \"Lin\",\nrole = \"ctb\",\nemail = \"dan.8.lin@gsk.com\"))", "Description": "This package implements a low dimensional visualization of\na set of cytometry samples, in order to visually assess the\n'distances' between them. This, in turn, can greatly help the\nuser to identify quality issues like batch effects or outlier\nsamples, and/or check the presence of potential sample clusters\nthat might align with the exeprimental design. The CytoMDS\nalgorithm combines, on the one hand, the concept of Earth\nMover's Distance (EMD), a.k.a. Wasserstein metric and, on the\nother hand, the Multi Dimensional Scaling (MDS) algorithm for\nthe low dimensional projection. Also, the package provides some\ndiagnostic tools for both checking the quality of the MDS\nprojection, as well as tools to help with the interpretation of\nthe axes of the projection.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "BugReports": "https://github.com/UCLouvain-CBIO/CytoMDS/issues", "URL": "https://uclouvain-cbio.github.io/CytoMDS", "biocViews": "FlowCytometry, QualityControl, DimensionReduction,\nMultidimensionalScaling, Software, Visualization", "Collate": "'CytoMDS-package.R' 'stats.R' 'ggplots.R' 'MDS-class.R'\n'DistSum-class.R'", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev make\nlibicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl\nlibx11-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-08-13 08:29:49 UTC", "RemoteUrl": "https://github.com/bioc/CytoMDS", "RemoteRef": "HEAD", 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