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  "Title": "An R package for colorectal cancer screening and microbiome\nanalysis",
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  "Description": "A developed and benchmarked reproducible machine learning\nframework for microbiome-based colorectal cancer (CRC)\nscreening. By systematically evaluating normalization\nstrategies, taxonomic resolutions, and class imbalance\nhandling. This R package allows users to apply the full\npipeline or selectively run specific components depending on\ntheir analytical needs. It establishes a scalable foundation\nfor developing interpretable microbiome-based screening tools\nto support early CRC detection. This approach could be easily\nimplemented in a national screening programme, to improve early\ndetection rates for this disease.",
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        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Paenibacillaceae.D_5__Paenibacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Lysinibacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Paenisporosarcina",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Psychrobacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Rummeliibacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Solibacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.D_5__Sporosarcina",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Planococcaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Staphylococcaceae.D_5__Nosocomiicoccus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.D_4__Staphylococcaceae.D_5__Staphylococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Bacillales.__.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Aerococcaceae.D_5__Abiotrophia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Aerococcaceae.D_5__Aerococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Aerococcaceae.D_5__Globicatella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Aerococcaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.D_5__Alloiococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.D_5__Atopostipes",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.D_5__Carnobacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.D_5__Dolosigranulum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.D_5__Granulicatella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Carnobacteriaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Enterococcaceae.D_5__Enterococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Enterococcaceae.D_5__Vagococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Lactobacillaceae.D_5__Lactobacillus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Lactobacillaceae.D_5__Pediococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Leuconostocaceae.D_5__Leuconostoc",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Leuconostocaceae.D_5__Weissella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Streptococcaceae.D_5__Lactococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Bacilli.D_3__Lactobacillales.D_4__Streptococcaceae.D_5__Streptococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Caldicoprobacteraceae.D_5__Caldicoprobacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Christensenellaceae.D_5__Christensenellaceae.R.7.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Christensenellaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Christensenellaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.1",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.13",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.18",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.2",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.3",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Clostridium.sensu.stricto.7",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiaceae.1.D_5__Sarcina",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiales.vadinBB60.group.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiales.vadinBB60.group.D_5__uncultured.rumen.bacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Clostridiales.vadinBB60.group.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Defluviitaleaceae.D_5__Defluviitaleaceae.UCG.011",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Eubacteriaceae.D_5__Anaerofustis",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Eubacteriaceae.D_5__Eubacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Eubacteriaceae.D_5__Pseudoramibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Anaerococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Ezakiella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Finegoldia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Gallicola",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Helcococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Murdochiella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Parvimonas",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Peptoniphilus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Sedimentibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__Tissierella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XI.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__Family.XIII.AD3011.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__Family.XIII.UCG.001",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__Family.XIII.UCG.002",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__Mogibacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__.Eubacterium..brachy.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__.Eubacterium..nodatum.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Family.XIII.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Gracilibacteraceae.D_5__Lutispora",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Gracilibacteraceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Heliobacteriaceae.D_5__Hydrogenispora",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Acetitomaculum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Anaerosporobacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Anaerostipes",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Blautia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Butyrivibrio",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Catonella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Cellulosilyticum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Coprococcus.1",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Coprococcus.2",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Coprococcus.3",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Dorea",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Eisenbergiella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Epulopiscium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Fusicatenibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Howardella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Hungatella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnoanaerobaculum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnoclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnoclostridium.5",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospira",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.AC2044.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.FCS020.group",
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        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.ND3007.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.NK3A20.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.NK4A136.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.NK4B4.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.UCG.001",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.UCG.003",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.UCG.004",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.UCG.008",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lachnospiraceae.UCG.010",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Lactonifactor",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Marvinbryantia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Mobilitalea",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Oribacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Pseudobutyrivibrio",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Roseburia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Sellimonas",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Shuttleworthia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Stomatobaculum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Tyzzerella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Tyzzerella.3",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__Tyzzerella.4",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Bacteroides..pectinophilus.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..eligens.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..fissicatena.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..hallii.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..rectale.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..ruminantium.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..ventriosum.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Eubacterium..xylanophilum.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Ruminococcus..gauvreauii.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Ruminococcus..gnavus.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__.Ruminococcus..torques.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Lachnospiraceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptococcaceae.D_5__Desulfitibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptococcaceae.D_5__Desulfurispora",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptococcaceae.D_5__Peptococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptococcaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Filifactor",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Intestinibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Paeniclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Paraclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Peptoclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Peptostreptococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.D_5__Terrisporobacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Peptostreptococcaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Acetivibrio",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Anaerofilum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Anaerotruncus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Butyricicoccus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Candidatus.Soleaferrea",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Caproiciproducens",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Faecalibacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Fastidiosipila",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Flavonifractor",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Hydrogenoanaerobacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Oscillibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Oscillospira",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminiclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminiclostridium.1",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminiclostridium.5",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminiclostridium.6",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminiclostridium.9",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.NK4A214.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.002",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.003",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.004",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.005",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.007",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.008",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.009",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.010",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.013",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcaceae.UCG.014",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcus.1",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Ruminococcus.2",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__Subdoligranulum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__.Eubacterium..coprostanoligenes.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Ruminococcaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.D_4__Syntrophomonadaceae.D_5__Syntrophomonas",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Clostridiales.__.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Halanaerobiales.D_4__ODP1230B8.23.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__MBA03.__.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Thermoanaerobacterales.D_4__Family.III.D_5__Caldicellulosiruptor",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Thermoanaerobacterales.D_4__Family.III.D_5__Thermoanaerobacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Thermoanaerobacterales.D_4__Thermoanaerobacteraceae.D_5__Gelria",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Thermoanaerobacterales.D_4__Thermoanaerobacteraceae.D_5__Syntrophaceticus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.D_3__Thermoanaerobacterales.D_4__Thermoanaerobacteraceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Clostridia.__.__.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Allobaculum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Candidatus.Stoquefichus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Catenibacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Catenisphaera",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Dielma",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Erysipelatoclostridium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Erysipelothrix",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Erysipelotrichaceae.UCG.003",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Erysipelotrichaceae.UCG.004",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Faecalitalea",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Holdemanella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Holdemania",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Solobacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__Turicibacter",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__.Anaerorhabdus..furcosa.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__.Clostridium..innocuum.group",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Erysipelotrichia.D_3__Erysipelotrichales.D_4__Erysipelotrichaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Acidaminococcaceae.D_5__Acidaminococcus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Acidaminococcaceae.D_5__Phascolarctobacterium",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Acidaminococcaceae.D_5__Succiniclasticum",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Allisonella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Anaeroglobus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Anaerosporomusa",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Anaerovibrio",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Dialister",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Megamonas",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Megasphaera",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Mitsuokella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Negativicoccus",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Schwartzia",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Selenomonas",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Selenomonas.3",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Selenomonas.4",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__Veillonella",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__Veillonellaceae.__",
        "D_0__Bacteria.D_1__Firmicutes.D_2__Negativicutes.D_3__Selenomonadales.D_4__uncultured.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Firmicutes.__.__.__.__",
        "D_0__Bacteria.D_1__Fusobacteria.D_2__Fusobacteriia.D_3__Fusobacteriales.D_4__Fusobacteriaceae.D_5__Cetobacterium",
        "D_0__Bacteria.D_1__Fusobacteria.D_2__Fusobacteriia.D_3__Fusobacteriales.D_4__Fusobacteriaceae.D_5__Fusobacterium",
        "D_0__Bacteria.D_1__Fusobacteria.D_2__Fusobacteriia.D_3__Fusobacteriales.D_4__Leptotrichiaceae.D_5__Leptotrichia",
        "D_0__Bacteria.D_1__Fusobacteria.D_2__Fusobacteriia.D_3__Fusobacteriales.D_4__Leptotrichiaceae.D_5__Oceanivirga",
        "D_0__Bacteria.D_1__Fusobacteria.D_2__Fusobacteriia.D_3__Fusobacteriales.D_4__Leptotrichiaceae.__",
        "D_0__Bacteria.D_1__Gemmatimonadetes.D_2__Gemmatimonadetes.D_3__Gemmatimonadales.D_4__Gemmatimonadaceae.D_5__Gemmatimonas",
        "D_0__Bacteria.D_1__Gracilibacteria.D_2__uncultured.bacterium.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Gracilibacteria.__.__.__.__",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Lentisphaeria.D_3__Victivallales.D_4__Victivallaceae.D_5__Victivallis",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Lentisphaeria.D_3__Victivallales.D_4__Victivallaceae.__",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Lentisphaeria.D_3__Victivallales.D_4__vadinBE97.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Lentisphaeria.D_3__Victivallales.D_4__vadinBE97.D_5__uncultured.rumen.bacterium",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Lentisphaeria.D_3__Victivallales.D_4__vadinBE97.__",
        "D_0__Bacteria.D_1__Lentisphaerae.D_2__Oligosphaeria.D_3__Oligosphaerales.D_4__Oligosphaeraceae.D_5__Z20",
        "D_0__Bacteria.D_1__Microgenomates.D_2__Candidatus.Woesebacteria.D_3__uncultured.Microgenomates.group.bacterium.D_4__uncultured.Microgenomates.group.bacterium.D_5__uncultured.Microgenomates.group.bacterium",
        "D_0__Bacteria.D_1__Microgenomates.D_2__Candidatus.Woesebacteria.__.__.__",
        "D_0__Bacteria.D_1__Nitrospirae.D_2__Nitrospira.D_3__Nitrospirales.D_4__0319.6A21.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Azambacteria.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Azambacteria.__.__.__",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Magasanikbacteria.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Magasanikbacteria.__.__.__",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Moranbacteria.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__Candidatus.Nomurabacteria.__.__.__",
        "D_0__Bacteria.D_1__Parcubacteria.D_2__uncultured.bacterium.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Parcubacteria.__.__.__.__",
        "D_0__Bacteria.D_1__Peregrinibacteria.D_2__Candidatus.Peribacteria.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Phycisphaerae.D_3__Phycisphaerales.D_4__Phycisphaeraceae.D_5__SM1A02",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Phycisphaerae.D_3__Tepidisphaerales.D_4__Tepidisphaeraceae.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Planctomycetacia.D_3__Planctomycetales.D_4__Planctomycetaceae.D_5__Pirellula",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Planctomycetacia.D_3__Planctomycetales.D_4__Planctomycetaceae.D_5__Planctomyces",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Planctomycetacia.D_3__Planctomycetales.D_4__Planctomycetaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__Planctomycetacia.D_3__Planctomycetales.D_4__Planctomycetaceae.__",
        "D_0__Bacteria.D_1__Planctomycetes.D_2__vadinHA49.D_3__uncultured.bacterium.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Alphaproteobacteria.Incertae.Sedis.D_4__uncultured.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Alphaproteobacteria.Incertae.Sedis.D_4__uncultured.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Caulobacterales.D_4__Caulobacteraceae.D_5__Brevundimonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Caulobacterales.D_4__Caulobacteraceae.D_5__Caulobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Caulobacterales.D_4__Caulobacteraceae.D_5__Phenylobacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Caulobacterales.D_4__Caulobacteraceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Caulobacterales.D_4__Caulobacteraceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Bartonellaceae.D_5__Bartonella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Bradyrhizobiaceae.D_5__Bosea",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Bradyrhizobiaceae.D_5__Bradyrhizobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Bradyrhizobiaceae.D_5__Rhodopseudomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Bradyrhizobiaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Hyphomicrobiaceae.D_5__Devosia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Methylobacteriaceae.D_5__Meganema",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Methylobacteriaceae.D_5__Methylobacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Methylobacteriaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Methylocystaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Phyllobacteriaceae.D_5__Mesorhizobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Phyllobacteriaceae.D_5__Phyllobacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Phyllobacteriaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Rhizobiaceae.D_5__Rhizobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Rhizobiales.Incertae.Sedis.D_5__Phreatobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Rhodobiaceae.D_5__Parvibaculum",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.D_4__Xanthobacteraceae.D_5__Labrys",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhizobiales.__.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodobacterales.D_4__Rhodobacteraceae.D_5__Paracoccus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodobacterales.D_4__Rhodobacteraceae.D_5__Rubellimicrobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodobacterales.D_4__Rhodobacteraceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Acetobacteraceae.D_5__Acetobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Acetobacteraceae.D_5__Acidiphilium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Acetobacteraceae.D_5__Roseomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Acetobacteraceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Acetobacteraceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Rhodospirillaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rhodospirillales.D_4__Rhodospirillaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__Mitochondria.Ambiguous_taxa",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__Mitochondria.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__Mitochondria.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__Rickettsiales.Incertae.Sedis.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__SM2D12.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Rickettsiales.D_4__.Caedibacter..caryophilus.group.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Erythrobacteraceae.D_5__Altererythrobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Erythrobacteraceae.D_5__Erythrobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Sphingomonadaceae.D_5__Blastomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Sphingomonadaceae.D_5__Novosphingobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Sphingomonadaceae.D_5__Sphingobium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Sphingomonadaceae.D_5__Sphingomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.D_3__Sphingomonadales.D_4__Sphingomonadaceae.D_5__Sphingopyxis",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Alphaproteobacteria.__.__.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__Achromobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__Advenella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__Alcaligenes",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__Parasutterella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__Sutterella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Alcaligenaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Burkholderiaceae.D_5__Burkholderia.Paraburkholderia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Burkholderiaceae.D_5__Cupriavidus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Burkholderiaceae.D_5__Lautropia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Burkholderiaceae.D_5__Polynucleobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Burkholderiaceae.D_5__Ralstonia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Acidovorax",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Aquabacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Comamonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Delftia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Hydrogenophaga",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Inhella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Limnohabitans",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Pelomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Polaromonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Pseudorhodoferax",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Schlegelella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Sphaerotilus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Tepidimonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.D_5__Variovorax",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Comamonadaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__Duganella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__Herbaspirillum",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__Massilia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__Noviherbaspirillum",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__Oxalobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Burkholderiales.D_4__Oxalobacteraceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Methylophilales.D_4__Methylophilaceae.D_5__Methylotenera",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Neisseriales.D_4__Neisseriaceae.D_5__Eikenella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Neisseriales.D_4__Neisseriaceae.D_5__Neisseria",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Neisseriales.D_4__Neisseriaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Rhodocyclales.D_4__Rhodocyclaceae.D_5__Azoarcus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Rhodocyclales.D_4__Rhodocyclaceae.D_5__Methyloversatilis",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Rhodocyclales.D_4__Rhodocyclaceae.D_5__Thauera",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.D_3__Rhodocyclales.D_4__Rhodocyclaceae.D_5__Zoogloea",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Betaproteobacteria.__.__.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Bdellovibrionales.D_4__Bdellovibrionaceae.D_5__Bdellovibrio",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Bradymonadales.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Desulfobacterales.D_4__Desulfobulbaceae.D_5__Desulfobulbus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Desulfovibrionales.D_4__Desulfovibrionaceae.D_5__Bilophila",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Desulfovibrionales.D_4__Desulfovibrionaceae.D_5__Desulfovibrio",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Desulfuromonadales.D_4__Geobacteraceae.D_5__Geobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Myxococcales.D_4__BIrii41.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Myxococcales.D_4__Haliangiaceae.D_5__Haliangium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Myxococcales.D_4__Sandaracinaceae.D_5__uncultured",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Myxococcales.__.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Oligoflexales.D_4__0319.6G20.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Oligoflexales.D_4__0319.6G20.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Oligoflexales.D_4__Oligoflexaceae.D_5__Oligoflexus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Deltaproteobacteria.D_3__Oligoflexales.D_4__Oligoflexaceae.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Epsilonproteobacteria.D_3__Campylobacterales.D_4__Campylobacteraceae.D_5__Arcobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Epsilonproteobacteria.D_3__Campylobacterales.D_4__Campylobacteraceae.D_5__Campylobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Epsilonproteobacteria.D_3__Campylobacterales.D_4__Helicobacteraceae.D_5__Helicobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Acidiferrobacterales.D_4__Acidiferrobacteraceae.D_5__Sulfurifustis",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Acidiferrobacterales.D_4__Acidiferrobacteraceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Aeromonadales.D_4__Aeromonadaceae.D_5__Aeromonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Aeromonadales.D_4__Succinivibrionaceae.D_5__Anaerobiospirillum",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Aeromonadales.D_4__Succinivibrionaceae.D_5__Succinivibrio",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Aeromonadales.D_4__Succinivibrionaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Cardiobacteriales.D_4__Cardiobacteriaceae.D_5__Cardiobacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Cellvibrionales.D_4__Halieaceae.D_5__Halioglobus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Chromatiales.D_4__Halothiobacillaceae.D_5__Thiovirga",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.Ambiguous_taxa",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Citrobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Cronobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Enterobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Erwinia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Escherichia.Shigella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Hafnia.Obesumbacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Kosakonia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Morganella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Pantoea",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Plesiomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Proteus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Providencia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Raoultella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Salmonella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Serratia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.D_5__Yersinia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Enterobacteriales.D_4__Enterobacteriaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__HTA4.D_4__uncultured.bacterium.D_5__uncultured.bacterium",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Legionellales.D_4__Legionellaceae.D_5__Legionella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Oceanospirillales.D_4__Alcanivoracaceae.D_5__Alcanivorax",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Oceanospirillales.D_4__Halomonadaceae.D_5__Cobetia",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Oceanospirillales.D_4__Oceanospirillaceae.D_5__Marinomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pasteurellales.D_4__Pasteurellaceae.D_5__Actinobacillus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pasteurellales.D_4__Pasteurellaceae.D_5__Aggregatibacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pasteurellales.D_4__Pasteurellaceae.D_5__Haemophilus",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pasteurellales.D_4__Pasteurellaceae.D_5__Pasteurella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pasteurellales.D_4__Pasteurellaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Acinetobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Alkanindiges",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Enhydrobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Moraxella",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Perlucidibaca",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__Psychrobacter",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Moraxellaceae.D_5__.Agitococcus..lubricus.group",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Pseudomonadaceae.D_5__Pseudomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Pseudomonadales.D_4__Pseudomonadaceae.D_5__Thiopseudomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Thiotrichales.D_4__Thiotrichaceae.__",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Vibrionales.D_4__Vibrionaceae.D_5__Vibrio",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Xanthomonadales.D_4__Xanthomonadaceae.D_5__Luteimonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Xanthomonadales.D_4__Xanthomonadaceae.D_5__Pseudoxanthomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Xanthomonadales.D_4__Xanthomonadaceae.D_5__Stenotrophomonas",
        "D_0__Bacteria.D_1__Proteobacteria.D_2__Gammaproteobacteria.D_3__Xanthomonadales.D_4__Xanthomonadaceae.D_5__Thermomonas",
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      "name": "Thomas_2018_RelativeAbundance",
      "title": "Thomas 2018 relative abundance dataset",
      "object": "Thomas_2018_RelativeAbundance",
      "file": "Thomas_2018_RelativeAbundance.RData",
      "class": [
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      "fields": [],
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    {
      "name": "ZellerG_2014_RelativeAbundance",
      "title": "Zeller 2014 relative abundance dataset",
      "object": "ZellerG_2014_RelativeAbundance",
      "file": "ZellerG_2014_RelativeAbundance.RData",
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  "_help": [
    {
      "page": "checkClassBalance",
      "title": "Check the sample distribution of the dataset and give the suggestion if need the class weight or not",
      "topics": [
        "checkClassBalance"
      ]
    },
    {
      "page": "CrcBiomeScreen-class",
      "title": "CrcBiomeScreen Class",
      "topics": [
        "CrcBiomeScreen-class"
      ]
    },
    {
      "page": "CreateCrcBiomeScreenObject",
      "title": "Create a CrcBiomeScreen S4 object for microbiome-based CRC analysis",
      "topics": [
        "CreateCrcBiomeScreenObject"
      ]
    },
    {
      "page": "CreateCrcBiomeScreenObjectFromTSE",
      "title": "Create a CrcBiomeScreen object from TreeSummarizedExperiment",
      "topics": [
        "CreateCrcBiomeScreenObjectFromTSE"
      ]
    },
    {
      "page": "EvaluateCrcBiomeScreen",
      "title": "Evaluate the performance of model predictions",
      "topics": [
        "EvaluateCrcBiomeScreen"
      ]
    },
    {
      "page": "EvaluateModel",
      "title": "Evaluate the model to select the optimal model",
      "topics": [
        "EvaluateModel"
      ]
    },
    {
      "page": "EvaluateRF",
      "title": "Evaluate the Random Forest model",
      "topics": [
        "EvaluateRF"
      ]
    },
    {
      "page": "EvaluateXGBoost",
      "title": "Evaluate the XGBoost model",
      "topics": [
        "EvaluateXGBoost"
      ]
    },
    {
      "page": "FilterDataSet",
      "title": "Filter the CrcBiomeScreenObject dataset based on a specific label",
      "topics": [
        "FilterDataSet"
      ]
    },
    {
      "page": "getAbsoluteAbundance",
      "title": "Accessor for AbsoluteAbundance slot of CrcBiomeScreen object",
      "topics": [
        "getAbsoluteAbundance",
        "getAbsoluteAbundance,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getModelData",
      "title": "Accessor for ModelData slot of CrcBiomeScreen object",
      "topics": [
        "getModelData"
      ]
    },
    {
      "page": "getModelResult",
      "title": "Accessor for ModelResult slot of CrcBiomeScreen object",
      "topics": [
        "getModelResult",
        "getModelResult,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getNormalizedData",
      "title": "Accessor for NormalizedData slot of CrcBiomeScreen object",
      "topics": [
        "getNormalizedData",
        "getNormalizedData,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getOutlierSamples",
      "title": "Accessor for OutlierSamples",
      "topics": [
        "getOutlierSamples",
        "getOutlierSamples,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getPredictResult",
      "title": "Accessor for PredictResult slot of CrcBiomeScreen object",
      "topics": [
        "getPredictResult",
        "getPredictResult,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getRelativeAbundance",
      "title": "Accessor for RelativeAbundance slot of CrcBiomeScreen object",
      "topics": [
        "getRelativeAbundance",
        "getRelativeAbundance,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getSampleData",
      "title": "Accessor for SampleData slot of CrcBiomeScreen object",
      "topics": [
        "getModelData,CrcBiomeScreen-method",
        "getSampleData",
        "getSampleData,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getTaxaData",
      "title": "Accessor for TaxaData slot of CrcBiomeScreen object",
      "topics": [
        "getTaxaData",
        "getTaxaData,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "getTaxaLevelData",
      "title": "Accessor for TaxaLevelData slot",
      "topics": [
        "getTaxaLevelData",
        "getTaxaLevelData,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "KeepTaxonomicLevel",
      "title": "Summarize abundance data at a given taxonomic level",
      "topics": [
        "KeepTaxonomicLevel"
      ]
    },
    {
      "page": "LoadTaxaTable",
      "title": "Load a custom taxa table for ASV/OTU data",
      "topics": [
        "LoadTaxaTable"
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    {
      "page": "ModelingRF",
      "title": "The packaging function for Random Forest modeling",
      "topics": [
        "ModelingRF"
      ]
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    {
      "page": "ModelingRF_noweights",
      "title": "The function for modeling random forest without using class weights",
      "topics": [
        "ModelingRF_noweights"
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    },
    {
      "page": "ModelingXGBoost",
      "title": "The packaging function for XGBoost modeling",
      "topics": [
        "ModelingXGBoost"
      ]
    },
    {
      "page": "ModelingXGBoost_noweights",
      "title": "The packaging function for XGBoost modeling without using class weights",
      "topics": [
        "ModelingXGBoost_noweights"
      ]
    },
    {
      "page": "NHSBCSP_screeningData",
      "title": "NHSBCSP screening dataset",
      "topics": [
        "NHSBCSP_screeningData"
      ]
    },
    {
      "page": "NormalizeData",
      "title": "Normalise the absolute data to relative data by using Total Sum Scaling and Geometric Mean of Pairwise Ratios (GMPR)",
      "topics": [
        "NormalizeData"
      ]
    },
    {
      "page": "PredictCrcBiomeScreen",
      "title": "Predict the class and probabilities for new data",
      "topics": [
        "PredictCrcBiomeScreen"
      ]
    },
    {
      "page": "qcByCmdscale",
      "title": "Quality control using classical MDS and outlier detection",
      "topics": [
        "qcByCmdscale"
      ]
    },
    {
      "page": "RunScreening",
      "title": "Run the screening process for the microbiome data",
      "topics": [
        "RunScreening"
      ]
    },
    {
      "page": "setNormalizedData-setter",
      "title": "setNormalizedData<-: Setter for NormalizedData slot of CrcBiomeScreen object",
      "topics": [
        "setNormalizedData-setter",
        "setNormalizedData<-",
        "setNormalizedData<-,CrcBiomeScreen-method"
      ]
    },
    {
      "page": "setTaxaData-setter",
      "title": "setTaxaData<-: Setter for TaxaData slot of CrcBiomeScreen object",
      "topics": [
        "setTaxaData-setter",
        "setTaxaData<-",
        "setTaxaData<-,CrcBiomeScreen-method"
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    {
      "page": "SplitDataSet",
      "title": "Split the dataset into training and test sets",
      "topics": [
        "SplitDataSet"
      ]
    },
    {
      "page": "SplitTaxas",
      "title": "Split and clean taxonomy strings",
      "topics": [
        "SplitTaxas"
      ]
    },
    {
      "page": "Thomas_2018_RelativeAbundance",
      "title": "Thomas 2018 relative abundance dataset",
      "topics": [
        "Thomas_2018_RelativeAbundance"
      ]
    },
    {
      "page": "TrainModels",
      "title": "Train the different models",
      "topics": [
        "TrainModels"
      ]
    },
    {
      "page": "ValidateModelOnData",
      "title": "Predict the validation data by using the trained model in CrcBiomeScreenObject",
      "topics": [
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    },
    {
      "page": "ZellerG_2014_RelativeAbundance",
      "title": "Zeller 2014 relative abundance dataset",
      "topics": [
        "ZellerG_2014_RelativeAbundance"
      ]
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  "_vignettes": [
    {
      "source": "CrcBiomeScreen.Rmd",
      "filename": "CrcBiomeScreen.html",
      "title": "CrcBiomeScreen: Colorectal Cancer Microbiome Screening and Analysis",
      "author": "Chengxin Li",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Getting started",
        "Exploring the data structure",
        "Data preparation",
        "Taxonomic data processing",
        "Supported formats",
        "Original taxa column",
        "Special handling of uncultured and unclassified",
        "Choosing a Taxonomic Level",
        "Handling Data Without Taxonomic Strings",
        "Example",
        "Data normalization",
        "Runnable toy workflow setup",
        "Setup the toy dataset",
        "Model training and evaluation",
        "External validation",
        "Full screening workflow in one step",
        "Get the the raw prediction scores for each sample",
        "Full-scale modeling workflow using real cohort data for reference",
        "Data filtering and splitting",
        "Quality control",
        "Model training and Evaluation",
        "Prediction & Evaluation",
        "Step 1: Predict on New Data",
        "Step 2: Evaluate Model Performance",
        "Streamlined Screening Workflow",
        "Best practices and recommendations",
        "Normalization method selection",
        "Model selection",
        "Validation strategies",
        "Class imbalance",
        "Troubleshooting",
        "Common issues and solutions",
        "Feature mismatch between datasets",
        "Memory issues with large datasets",
        "Session information",
        "References"
      ],
      "created": "2025-09-03 16:01:26",
      "modified": "2026-04-14 14:00:39",
      "commits": 36
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